Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   LG283_RS06295 Genome accession   NZ_CP085207
Coordinates   1189403..1191100 (+) Length   565 a.a.
NCBI ID   WP_404285103.1    Uniprot ID   -
Organism   Exiguobacterium aurantiacum strain QJJ-923     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1184403..1196100
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG283_RS06270 (LG283_06265) xseB 1184851..1185081 (+) 231 WP_034777980.1 exodeoxyribonuclease VII small subunit -
  LG283_RS06275 (LG283_06270) - 1185078..1185956 (+) 879 WP_214711445.1 polyprenyl synthetase family protein -
  LG283_RS06280 (LG283_06275) dxs 1186080..1187972 (+) 1893 WP_404285102.1 1-deoxy-D-xylulose-5-phosphate synthase -
  LG283_RS06285 (LG283_06280) - 1187979..1188800 (+) 822 WP_034777976.1 TlyA family RNA methyltransferase -
  LG283_RS06290 (LG283_06285) ahrC 1188940..1189389 (+) 450 WP_021067696.1 transcriptional regulator AhrC/ArgR -
  LG283_RS06295 (LG283_06290) recN 1189403..1191100 (+) 1698 WP_404285103.1 DNA repair protein RecN Machinery gene
  LG283_RS06300 (LG283_06295) spo0A 1191101..1191832 (+) 732 WP_138859276.1 sporulation transcription factor Spo0A -
  LG283_RS06305 (LG283_06300) - 1192445..1192693 (-) 249 WP_034777970.1 DUF2627 family protein -
  LG283_RS06310 (LG283_06305) - 1192824..1194461 (+) 1638 WP_138859277.1 sigma 54-interacting transcriptional regulator -
  LG283_RS06315 (LG283_06310) yqiS 1194584..1195480 (+) 897 WP_138859278.1 phosphate butyryltransferase -

Sequence

Protein


Download         Length: 565 a.a.        Molecular weight: 63385.28 Da        Isoelectric Point: 4.7313

>NTDB_id=615870 LG283_RS06295 WP_404285103.1 1189403..1191100(+) (recN) [Exiguobacterium aurantiacum strain QJJ-923]
MLAELSIKQFAIIDELNITFKRGMTVLTGETGAGKSILLDAIGLLVGGRGSSEFVRYGQDKAEIEGLFIVEPDHPILEAA
TQYGIEIEEGTVILRRDLHSSGKSVCRVNGKMMPLSTLRELGRLLVDIHGQHEHQHLMDAEYHLGILDSFAESELAPLLE
RYREAYVDWKNVADELKRLSQSEQELAQRMDLLAFQTNEIEAAELKVGEEQALTEERNELANFERIHQHVRLSYEAVADE
AKGLDQIGIAMREMEEASALSTSLAPMAETISNAYFLLEDAKFQLRDQLDSLEFDPIRLDEIETRLALFQQLKRKYGATI
DEVITYGEKIADELKSMTNREEHLQELSDRLAQLEQKVRTSGLTLSAARKQAATELEKAIQRELKELYMEKTQFEVRFKE
GPFKADGLDQVEFYMMTNVGEPFKPLAKVASGGELSRVMLALKSIFSRTVGVASIIFDEVDTGVSGRVAQAMGEKIFRLS
VGSQVLCITHLAQVAAMADQHLYITKTETDDRTKTNVSTLGHAERVDELGRMIAGAQMTDLTKQHVEELLTMSLQLKRKF
IEGVS

Nucleotide


Download         Length: 1698 bp        

>NTDB_id=615870 LG283_RS06295 WP_404285103.1 1189403..1191100(+) (recN) [Exiguobacterium aurantiacum strain QJJ-923]
ATGTTAGCAGAACTATCGATCAAACAATTTGCGATCATCGATGAACTGAATATCACGTTCAAACGTGGGATGACCGTATT
GACAGGGGAGACCGGGGCCGGGAAGTCAATCTTACTCGACGCCATCGGTTTGCTCGTCGGGGGACGCGGCTCGAGCGAGT
TCGTCCGTTACGGTCAAGACAAGGCGGAGATCGAAGGGCTGTTCATCGTCGAACCGGACCACCCGATCCTCGAGGCGGCG
ACCCAATACGGGATCGAGATCGAAGAAGGGACCGTCATTTTACGCCGCGACTTACATAGCAGCGGAAAGAGCGTATGCCG
GGTCAACGGCAAGATGATGCCGCTATCGACGCTACGCGAACTCGGCCGACTGCTCGTCGATATCCATGGCCAGCACGAGC
ATCAGCACTTGATGGATGCCGAGTACCATCTCGGTATTTTGGACAGCTTTGCCGAATCCGAGCTCGCCCCGCTCCTCGAG
CGATATCGCGAGGCTTACGTCGATTGGAAAAACGTCGCCGATGAGTTGAAACGGTTGAGTCAAAGTGAACAAGAGTTGGC
CCAACGCATGGACTTGCTCGCGTTCCAGACGAATGAGATCGAGGCGGCCGAGCTGAAAGTCGGTGAAGAACAGGCGCTCA
CGGAGGAACGGAACGAGCTCGCCAACTTCGAGCGGATTCATCAGCACGTCCGGTTATCGTATGAGGCGGTCGCGGATGAG
GCGAAAGGGCTCGACCAGATCGGCATCGCCATGCGCGAGATGGAGGAAGCCTCCGCATTGTCGACATCGCTCGCGCCGAT
GGCCGAGACGATCTCGAACGCTTACTTCTTGCTCGAAGACGCGAAATTTCAGTTGCGTGACCAGCTCGACTCGCTCGAAT
TCGATCCGATCCGGCTCGATGAGATTGAGACGCGGCTCGCTTTGTTCCAACAGCTGAAGCGGAAATACGGTGCCACGATC
GACGAGGTCATCACGTACGGCGAAAAAATTGCCGATGAGTTAAAATCGATGACGAATCGGGAAGAACATTTGCAAGAACT
ATCGGACCGGCTCGCCCAGCTCGAACAAAAAGTACGTACGTCCGGGCTGACGCTATCGGCGGCCCGTAAACAAGCGGCTA
CCGAGCTCGAGAAGGCGATTCAGCGTGAATTGAAAGAATTATATATGGAGAAGACCCAGTTCGAAGTTCGGTTCAAAGAA
GGACCGTTCAAGGCGGACGGGCTCGATCAAGTCGAATTCTATATGATGACGAACGTCGGGGAGCCTTTCAAGCCGCTCGC
CAAAGTGGCCTCCGGCGGAGAATTGTCCCGCGTCATGCTCGCCTTGAAGTCGATTTTCTCGCGAACGGTCGGCGTCGCGT
CGATCATTTTCGATGAAGTGGACACGGGTGTCTCGGGGCGGGTCGCCCAAGCGATGGGTGAGAAGATCTTCCGTCTGTCG
GTCGGCTCACAAGTGCTCTGTATCACCCATTTGGCTCAAGTGGCCGCCATGGCAGATCAGCACTTGTACATCACGAAGAC
GGAGACGGATGATCGCACGAAGACGAACGTCTCCACGCTTGGTCATGCCGAACGAGTCGATGAGCTCGGGCGCATGATCG
CCGGGGCGCAGATGACGGATTTGACGAAACAACATGTGGAGGAACTGCTCACTATGTCTCTCCAATTAAAACGGAAGTTT
ATCGAAGGGGTGTCTTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

54.276

100

0.55