Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   SCI_RS02515 Genome accession   NC_022238
Coordinates   491604..492317 (-) Length   237 a.a.
NCBI ID   WP_006267488.1    Uniprot ID   -
Organism   Streptococcus constellatus subsp. pharyngis C1050     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 486604..497317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCI_RS02500 (SCI_0499) - 487078..488202 (+) 1125 WP_006267252.1 AI-2E family transporter -
  SCI_RS02505 (SCI_0500) - 488449..490095 (+) 1647 WP_020997653.1 phosphoenolpyruvate carboxykinase (ATP) -
  SCI_RS02510 (SCI_0501) - 490209..491549 (+) 1341 WP_006267599.1 hemolysin family protein -
  SCI_RS02515 (SCI_0502) treR 491604..492317 (-) 714 WP_006267488.1 trehalose operon repressor Regulator
  SCI_RS11200 - 492492..492758 (+) 267 Protein_482 PTS transporter subunit EIIB -
  SCI_RS02520 (SCI_0503) - 493019..494503 (+) 1485 WP_407829554.1 glucose PTS transporter subunit IIA -
  SCI_RS02525 (SCI_0504) treC 494684..496315 (+) 1632 WP_020999315.1 alpha,alpha-phosphotrehalase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27775.86 Da        Isoelectric Point: 9.4377

>NTDB_id=61585 SCI_RS02515 WP_006267488.1 491604..492317(-) (treR) [Streptococcus constellatus subsp. pharyngis C1050]
MKKYEQIFKFIEQDILNEKYQVNDYLPSEHELVQTYKVSRDTIRKSLDLLQKAGLIQKLKGQGSKVTKQEQIDFPVSNLT
SYQELVQQHGINSKTNVIQLEKITVDKKLSNLTGFPEYRLVWRIVRQRVVDDVASVLDIDYLDKSLVPSMTREIAEQSIY
AYLEGKLGLHIAYAQKEITIDLATNRDKILMDIENDQHVVSVKSKVYLTDGQQFQFTDSRHKLEKFRFIDFAKRQKR

Nucleotide


Download         Length: 714 bp        

>NTDB_id=61585 SCI_RS02515 WP_006267488.1 491604..492317(-) (treR) [Streptococcus constellatus subsp. pharyngis C1050]
ATGAAGAAATATGAACAAATTTTTAAATTCATAGAACAAGATATTCTAAATGAAAAATATCAAGTTAATGATTATCTCCC
TAGCGAGCATGAACTCGTCCAAACCTACAAAGTCAGCCGTGATACCATTCGCAAGTCACTTGATTTACTTCAAAAAGCTG
GTCTTATCCAAAAACTGAAAGGGCAGGGCTCTAAAGTTACTAAACAAGAACAGATTGACTTTCCTGTCTCCAATCTGACT
AGTTACCAAGAACTCGTGCAACAGCATGGGATAAATTCTAAAACAAATGTCATTCAGTTAGAAAAAATCACGGTTGATAA
AAAGTTATCCAATCTCACAGGCTTTCCTGAATACCGTCTGGTATGGCGAATTGTCCGCCAGAGAGTAGTCGATGACGTCG
CTTCCGTCTTAGATATTGATTACCTTGATAAGAGCCTTGTCCCTTCCATGACTCGAGAAATAGCAGAACAATCGATTTAT
GCTTATCTAGAAGGAAAACTAGGGCTGCACATTGCTTATGCCCAAAAAGAAATCACAATTGATCTAGCTACAAACCGCGA
TAAAATTTTGATGGACATTGAAAATGATCAACACGTCGTTTCTGTTAAATCCAAAGTCTATCTTACAGATGGACAGCAAT
TCCAATTCACAGATAGCCGCCATAAACTGGAAAAATTCCGTTTTATTGACTTTGCTAAGCGACAAAAACGATAA

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(90-227)

Bacterial regulatory proteins, gntR family (GntR)

(3-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

65.254

99.578

0.65

Multiple sequence alignment