Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   Ped0055_RS06900 Genome accession   NZ_CP085175
Coordinates   1385904..1387274 (-) Length   456 a.a.
NCBI ID   WP_002833248.1    Uniprot ID   A0AAU7NM61
Organism   Pediococcus pentosaceus strain MGB0055     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1380904..1392274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Ped0055_RS06880 (Ped0055_06895) - 1381200..1381613 (-) 414 WP_023440688.1 Mini-ribonuclease 3 -
  Ped0055_RS06885 (Ped0055_06900) cysS 1381606..1383018 (-) 1413 WP_055126396.1 cysteine--tRNA ligase -
  Ped0055_RS06890 (Ped0055_06905) gltX 1383199..1384686 (-) 1488 WP_002833250.1 glutamate--tRNA ligase -
  Ped0055_RS06895 (Ped0055_06910) - 1384756..1385886 (-) 1131 WP_002833249.1 PIN/TRAM domain-containing protein -
  Ped0055_RS06900 (Ped0055_06915) radA 1385904..1387274 (-) 1371 WP_002833248.1 DNA repair protein RadA Machinery gene
  Ped0055_RS06905 (Ped0055_06920) - 1387374..1387907 (-) 534 WP_002833247.1 dUTP diphosphatase -
  Ped0055_RS06910 (Ped0055_06925) - 1388044..1388373 (+) 330 WP_055126397.1 GNAT family N-acetyltransferase -
  Ped0055_RS06915 (Ped0055_06930) rpiA 1388377..1389063 (+) 687 WP_002833245.1 ribose-5-phosphate isomerase RpiA -
  Ped0055_RS06920 (Ped0055_06935) - 1389133..1390479 (+) 1347 WP_055126398.1 C1 family peptidase -
  Ped0055_RS06925 (Ped0055_06940) - 1390555..1390935 (-) 381 WP_055126399.1 helix-turn-helix domain-containing protein -
  Ped0055_RS06930 (Ped0055_06945) - 1390999..1392186 (-) 1188 WP_055126400.1 MFS transporter -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50360.80 Da        Isoelectric Point: 6.7620

>NTDB_id=615719 Ped0055_RS06900 WP_002833248.1 1385904..1387274(-) (radA) [Pediococcus pentosaceus strain MGB0055]
MAKVKTQFLCSECGYVSPKFLGRCPNCGRWNTLVEERISEPKNERKSRVSFEGKSSKPQLISEVKMHEEPRVKTGMEELN
RVLGGGVVDGSLVLIGGDPGIGKSTLLLQLSGQLAATDRDVLYVSGEESASQIKMRAERLQVNSERFYLYPETDMSNIRA
VIEELHPQYVIIDSVQTMQEPDIDSAVGSVSQIREITAELMQIAKTNNITIFIVGHVTKGGAIAGPKILEHMVDTVLYFE
GDLHHTYRILRAVKNRFGSTNELGIFEMREEGLREVANPSEIFLEERLQDANGSAIVVSMEGTRPILVEIQALITPTIFG
NAQRTASGLDRNRVSLIMAVLEKRANLTLQNQDAYLKAAGGVKLDEPAIDLAIAMSIVSSFKNQGTRPTDSFVGEIGLTG
EIRRVNRIEQRVAEAQKLGFQRILIPKNNLKGWNPPKGIEVVGVTTITDAIRKAFN

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=615719 Ped0055_RS06900 WP_002833248.1 1385904..1387274(-) (radA) [Pediococcus pentosaceus strain MGB0055]
TTGGCTAAAGTAAAAACACAGTTTTTGTGTTCAGAATGTGGGTATGTTTCACCTAAATTCTTAGGGCGTTGTCCTAATTG
TGGAAGATGGAACACTCTGGTTGAAGAGCGGATTAGTGAACCTAAAAATGAACGTAAGAGTCGCGTTAGTTTTGAGGGTA
AAAGTAGTAAACCACAATTAATTTCAGAAGTTAAAATGCACGAAGAACCGCGAGTTAAAACAGGGATGGAAGAACTGAAC
CGAGTGCTCGGTGGTGGTGTAGTAGATGGCTCACTAGTTCTAATTGGTGGAGATCCAGGAATTGGAAAGTCGACCCTATT
ATTACAACTATCTGGGCAATTAGCTGCTACTGATCGAGATGTTTTATACGTGTCTGGGGAAGAAAGTGCTTCACAGATCA
AGATGCGCGCCGAACGTTTACAGGTTAACAGTGAACGTTTTTACTTATACCCTGAAACTGATATGTCCAATATTCGTGCG
GTCATTGAGGAACTACATCCTCAGTATGTAATTATTGATTCTGTTCAAACCATGCAAGAGCCCGACATTGATTCAGCAGT
AGGTAGTGTATCGCAAATTCGAGAAATTACAGCCGAATTAATGCAGATTGCTAAAACAAATAACATTACTATTTTTATTG
TTGGTCATGTAACTAAAGGCGGAGCCATTGCTGGTCCTAAAATTTTAGAACATATGGTTGATACAGTACTTTATTTTGAA
GGCGATTTGCATCATACGTATCGAATTTTACGAGCGGTTAAAAATCGATTTGGTTCTACGAATGAATTGGGAATTTTCGA
AATGCGAGAGGAAGGGCTTCGAGAAGTAGCCAATCCTTCGGAAATCTTTTTAGAGGAACGCCTGCAAGATGCTAACGGTT
CCGCTATTGTGGTTTCGATGGAAGGTACTCGACCAATTTTGGTCGAAATTCAAGCTTTGATTACGCCTACCATTTTTGGG
AATGCTCAGCGGACTGCTAGCGGGTTGGATCGTAACCGAGTCTCATTAATTATGGCAGTTTTAGAAAAAAGGGCTAATTT
AACGTTGCAGAACCAAGACGCCTACTTAAAGGCTGCTGGCGGAGTGAAATTGGATGAGCCAGCAATTGATTTGGCAATTG
CGATGAGTATTGTATCGAGTTTTAAGAATCAAGGTACGAGACCGACTGATAGCTTTGTTGGCGAAATTGGTTTAACTGGT
GAAATCCGACGGGTTAATCGGATTGAACAACGGGTTGCCGAAGCTCAAAAACTAGGTTTTCAACGAATTTTAATTCCTAA
GAATAATTTGAAGGGTTGGAATCCACCTAAAGGGATTGAAGTAGTAGGAGTAACAACGATTACGGACGCAATTCGGAAGG
CGTTTAATTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(72-221)

Subunit ChlI of Mg-chelatase (ChlI)

(362-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

66.813

99.781

0.667
  radA Streptococcus mitis NCTC 12261

66.813

99.781

0.667
  radA Streptococcus mitis SK321

66.813

99.781

0.667
  radA Streptococcus pneumoniae TIGR4

66.813

99.781

0.667
  radA Streptococcus pneumoniae D39

66.813

99.781

0.667
  radA Streptococcus pneumoniae R6

66.813

99.781

0.667
  radA Bacillus subtilis subsp. subtilis str. 168

65.132

100

0.651