Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LIO05_RS16950 Genome accession   NZ_CP085103
Coordinates   3362038..3362634 (-) Length   198 a.a.
NCBI ID   WP_004150836.1    Uniprot ID   A0A0H3GL50
Organism   Klebsiella pneumoniae strain Kp_2019-1792     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3357038..3367634
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIO05_RS16935 (LIO05_16945) helD 3357246..3359300 (-) 2055 WP_009308304.1 DNA helicase IV -
  LIO05_RS16940 (LIO05_16950) - 3359425..3359871 (+) 447 WP_002898425.1 YccF domain-containing protein -
  LIO05_RS16945 (LIO05_16955) yccS 3359889..3362024 (+) 2136 WP_060568535.1 YccS family putative transporter -
  LIO05_RS16950 (LIO05_16960) sxy/tfoX 3362038..3362634 (-) 597 WP_004150836.1 TfoX/Sxy family DNA transformation protein Regulator
  LIO05_RS16955 (LIO05_16965) sulA 3362983..3363492 (+) 510 WP_004179215.1 SOS-induced cell division inhibitor SulA -
  LIO05_RS16960 (LIO05_16970) ompA 3363845..3364915 (+) 1071 WP_002898408.1 porin OmpA -
  LIO05_RS16965 (LIO05_16975) matP 3365047..3365499 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  LIO05_RS16970 (LIO05_16980) - 3365685..3367442 (+) 1758 WP_032103551.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22576.15 Da        Isoelectric Point: 10.1298

>NTDB_id=615622 LIO05_RS16950 WP_004150836.1 3362038..3362634(-) (sxy/tfoX) [Klebsiella pneumoniae strain Kp_2019-1792]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNYRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=615622 LIO05_RS16950 WP_004150836.1 3362038..3362634(-) (sxy/tfoX) [Klebsiella pneumoniae strain Kp_2019-1792]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGAAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTACCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCCACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3GL50

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51