Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   SII_RS08520 Genome accession   NC_022237
Coordinates   1773618..1775033 (-) Length   471 a.a.
NCBI ID   WP_020999211.1    Uniprot ID   -
Organism   Streptococcus intermedius C270     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1768618..1780033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SII_RS08495 (SII_1673) - 1768747..1769427 (-) 681 WP_003073952.1 rhomboid family intramembrane serine protease -
  SII_RS08500 (SII_1674) - 1769420..1769947 (-) 528 WP_020999208.1 5-formyltetrahydrofolate cyclo-ligase -
  SII_RS09975 (SII_1675) - 1769993..1771123 (-) 1131 WP_003073949.1 N-acetyldiaminopimelate deacetylase -
  SII_RS09980 (SII_1676) dapD 1771136..1771834 (-) 699 WP_020999209.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  SII_RS08515 (SII_1677) gltX 1771952..1773409 (-) 1458 WP_148290366.1 glutamate--tRNA ligase -
  SII_RS08520 (SII_1678) radA 1773618..1775033 (-) 1416 WP_020999211.1 DNA repair protein RadA Machinery gene
  SII_RS08525 (SII_1679) - 1774991..1775461 (-) 471 WP_020999212.1 cysteine hydrolase family protein -
  SII_RS08530 (SII_1680) - 1775471..1775914 (-) 444 WP_003073939.1 dUTP diphosphatase -
  SII_RS08535 (SII_1681) - 1776008..1777042 (-) 1035 WP_020999213.1 S66 peptidase family protein -
  SII_RS08545 (SII_1682) - 1778106..1779122 (+) 1017 WP_003076007.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -

Sequence

Protein


Download         Length: 471 a.a.        Molecular weight: 51647.20 Da        Isoelectric Point: 6.7134

>NTDB_id=61561 SII_RS08520 WP_020999211.1 1773618..1775033(-) (radA) [Streptococcus intermedius C270]
MADCWNSNERRITIAKKKTTFVCQECGYNSPKYLGRCPNCSSWSSFVEEVEVAEVKNARVSLIGEKTRPVKLNQVTSSQA
TRVKTNMEEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLANKGTVFYVSGEESAEQIKLRSERLGDIDNEFYLY
AETNMQSIRAEIEKIQPDFLIIDSIQTVMSPEISSVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLE
HMVDTVLYFEGERQHTFRILRAVKNRFGSTNEIGIFEMRSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGTRPILAEV
QALVTPTVFGNAKRTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVRLDEPAIDLAVAVAIASSYKEKPTNPQE
CYIGEIGLTGEIRRVNRIEQRLNEASKLGFTKIFVPKNSLSGLTIPQGIQVVGVTTVGEVLKKVFDEANKN

Nucleotide


Download         Length: 1416 bp        

>NTDB_id=61561 SII_RS08520 WP_020999211.1 1773618..1775033(-) (radA) [Streptococcus intermedius C270]
ATGGCAGATTGCTGGAATAGTAACGAAAGGAGAATTACCATAGCTAAGAAAAAAACAACTTTTGTCTGTCAAGAGTGCGG
CTATAATTCGCCCAAGTATCTGGGACGTTGTCCTAATTGCTCGTCTTGGTCTTCTTTTGTTGAAGAGGTTGAAGTTGCTG
AGGTTAAAAATGCTCGCGTTTCACTGATAGGTGAGAAGACACGGCCAGTCAAGTTAAATCAGGTCACCTCCAGCCAAGCC
ACTAGAGTCAAGACCAATATGGAAGAATTCAACCGTGTTTTGGGTGGTGGTGTTGTACCAGGCAGTCTGGTTCTTATCGG
CGGTGATCCCGGCATCGGGAAATCGACCCTACTTTTGCAAGTTTCAACACAATTAGCCAATAAAGGAACTGTTTTTTATG
TTTCTGGTGAAGAATCAGCGGAGCAGATCAAGTTGCGTAGCGAGCGTCTCGGTGATATTGACAATGAGTTTTATCTCTAT
GCTGAAACTAATATGCAAAGTATTCGTGCTGAGATTGAAAAAATCCAGCCTGATTTTTTAATTATTGATTCTATTCAAAC
AGTGATGAGTCCTGAAATTTCCAGTGTTCAAGGTTCTGTTTCTCAGGTGCGTGAAGTGACAGCAGAATTAATGCAATTAG
CTAAAACCAATAACATTGCGACTTTTATTGTTGGACATGTGACTAAAGAAGGAACCTTAGCTGGACCGCGAATGTTAGAA
CACATGGTGGACACTGTGCTCTACTTTGAAGGCGAGCGGCAGCATACTTTTCGTATCTTACGAGCCGTTAAAAATCGCTT
TGGTTCTACTAATGAGATTGGTATTTTTGAAATGAGGTCGGGTGGTTTGGTTGAGGTTTTGAATCCCAGCCAAGTTTTTT
TAGAAGAGCGTCTAGATGGAGCAACAGGCTCAGCTATTGTTGTTACCATGGAAGGGACACGACCTATTTTAGCGGAAGTA
CAAGCCCTAGTAACACCAACTGTTTTTGGTAATGCTAAACGGACAACAACAGGACTGGACTTTAATCGTGTTAGTTTGAT
TATGGCGGTTTTGGAGAAGCGCTGCGGACTTTTATTGCAAAATCAAGATGCCTATCTCAAATCAGCTGGTGGTGTGCGCT
TAGATGAGCCTGCTATTGATTTAGCGGTTGCGGTAGCCATTGCTTCCAGTTATAAGGAAAAGCCAACCAACCCTCAAGAA
TGTTATATTGGTGAAATTGGTTTGACAGGTGAAATTCGTCGTGTTAATCGTATCGAACAACGTCTCAATGAAGCTAGTAA
GCTAGGTTTTACCAAGATTTTTGTGCCCAAAAATTCCCTGTCAGGTTTAACGATTCCACAAGGTATTCAGGTAGTTGGTG
TGACAACTGTTGGTGAGGTTTTGAAAAAGGTGTTTGACGAAGCAAATAAAAACTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(77-231)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(21-48)

Subunit ChlI of Mg-chelatase (ChlI)

(375-438)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

88.938

95.966

0.854
  radA Streptococcus pneumoniae D39

88.938

95.966

0.854
  radA Streptococcus pneumoniae R6

88.938

95.966

0.854
  radA Streptococcus pneumoniae TIGR4

88.938

95.966

0.854
  radA Streptococcus mitis SK321

88.938

95.966

0.854
  radA Streptococcus mitis NCTC 12261

88.717

95.966

0.851
  radA Bacillus subtilis subsp. subtilis str. 168

61.81

96.178

0.594

Multiple sequence alignment