Detailed information    

insolico Bioinformatically predicted

Overview


Name   sepM   Type   Regulator
Locus tag   NQZ90_RS08025 Genome accession   NZ_CP102148
Coordinates   1639716..1640765 (-) Length   349 a.a.
NCBI ID   WP_014638484.1    Uniprot ID   -
Organism   Streptococcus suis strain DNC15     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context


Location: 1634716..1645765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ90_RS08005 (NQZ90_08005) trpB 1635248..1636423 (-) 1176 WP_024414001.1 tryptophan synthase subunit beta -
  NQZ90_RS08010 (NQZ90_08010) - 1637242..1637769 (-) 528 WP_044672083.1 VanZ family protein -
  NQZ90_RS08015 (NQZ90_08015) rlmN 1637766..1638878 (-) 1113 WP_012028433.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  NQZ90_RS08020 (NQZ90_08020) - 1638887..1639528 (-) 642 WP_014638483.1 YutD-like domain-containing protein -
  NQZ90_RS08025 (NQZ90_08025) sepM 1639716..1640765 (-) 1050 WP_014638484.1 SepM family pheromone-processing serine protease Regulator
  NQZ90_RS08030 (NQZ90_08030) coaD 1640752..1641240 (-) 489 WP_002939048.1 pantetheine-phosphate adenylyltransferase -
  NQZ90_RS08035 (NQZ90_08035) rsmD 1641230..1641769 (-) 540 WP_014638485.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  NQZ90_RS08040 (NQZ90_08040) - 1642069..1642791 (-) 723 WP_024413997.1 hypothetical protein -
  NQZ90_RS08045 (NQZ90_08045) - 1642848..1643234 (-) 387 WP_004194735.1 rhodanese-like domain-containing protein -
  NQZ90_RS08050 (NQZ90_08050) - 1643234..1643452 (-) 219 WP_004194736.1 YqgQ family protein -
  NQZ90_RS08055 (NQZ90_08055) - 1643760..1644362 (-) 603 WP_024413996.1 response regulator transcription factor -
  NQZ90_RS08060 (NQZ90_08060) - 1644359..1645453 (-) 1095 WP_024413995.1 sensor histidine kinase -

Sequence


Protein


Download         Length: 349 a.a.        Molecular weight: 37719.70 Da        Isoelectric Point: 4.4261

>NTDB_id=615606 NQZ90_RS08025 WP_014638484.1 1639716..1640765(-) (sepM) [Streptococcus suis strain DNC15]
MKKNRKLTLIASIVLGTLLIWFAVFVRLPYYLESPGGAADIRQVLTVNNQIDQEDGSYNFTYVSVQQATALQLFAAQFDP
YTTVRSSEEMTGGADNEEYFRIAQFYMETSQNMAKYQGLTLAGKEVNLDFFGVYVLALADDSTFKKVLNIADTVVSINGK
TFESSPDLIKYVSGLELGSDVTVGYISAGQEKSADGKIIKLSNGKNGIGITLVDHTEVQSSIPIDFQTGDIGGPSAGLMF
TLAIYTQLAEPDLRDGRIIAGTGTIEQDGKVGDIGGADKKVISAAKSGASIFFVPNNPVDVEVLKEDPKAKTNYEEAKEA
AEKAGLDIEVVPVKTVQEAIDYLKKTKGE

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=615606 NQZ90_RS08025 WP_014638484.1 1639716..1640765(-) (sepM) [Streptococcus suis strain DNC15]
ATGAAGAAAAATAGGAAGTTAACCTTAATTGCATCTATTGTTTTAGGAACTCTTTTGATTTGGTTTGCCGTTTTTGTTCG
TCTGCCTTATTATTTGGAAAGTCCAGGTGGAGCTGCCGATATTCGTCAGGTACTAACGGTGAACAATCAAATAGACCAAG
AGGATGGCTCTTACAACTTCACCTATGTATCAGTCCAACAAGCTACAGCTTTACAACTATTCGCTGCTCAGTTTGATCCC
TATACGACAGTTCGTTCCTCTGAAGAGATGACAGGAGGGGCCGACAATGAAGAGTATTTCCGTATAGCACAGTTTTACAT
GGAGACATCGCAAAATATGGCGAAGTACCAAGGTTTGACCTTGGCAGGAAAAGAAGTCAATCTTGATTTCTTTGGTGTCT
ATGTACTTGCCTTGGCGGATGATTCGACCTTTAAAAAAGTTCTTAATATTGCCGACACTGTTGTGAGTATCAATGGAAAA
ACATTTGAGTCTTCTCCTGATTTGATTAAATATGTGAGTGGCTTGGAACTTGGAAGTGATGTAACAGTTGGTTATATTAG
CGCTGGTCAGGAAAAATCTGCGGACGGTAAGATTATCAAATTATCTAATGGTAAAAACGGAATAGGCATCACTCTCGTAG
ATCATACAGAGGTTCAAAGTTCGATTCCGATTGATTTCCAAACGGGAGATATTGGTGGTCCAAGTGCTGGTCTGATGTTT
ACACTTGCCATCTATACTCAACTCGCAGAGCCTGACTTACGTGATGGTCGAATTATTGCTGGTACGGGGACTATCGAGCA
GGATGGAAAAGTAGGTGACATTGGTGGGGCTGATAAGAAGGTTATTTCGGCAGCTAAGTCAGGCGCAAGTATCTTTTTCG
TACCAAATAATCCAGTTGATGTGGAAGTTTTGAAGGAAGATCCAAAGGCTAAAACCAACTATGAGGAAGCTAAAGAAGCA
GCGGAGAAAGCAGGATTGGATATTGAGGTAGTTCCTGTGAAAACTGTTCAAGAGGCTATTGATTATTTGAAGAAAACGAA
GGGCGAGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

60.807

99.427

0.605