Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   NQZ90_RS07840 Genome accession   NZ_CP102148
Coordinates   1596592..1598253 (-) Length   553 a.a.
NCBI ID   WP_257110175.1    Uniprot ID   -
Organism   Streptococcus suis strain DNC15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1591592..1603253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ90_RS07815 (NQZ90_07815) - 1592976..1593443 (-) 468 WP_044676587.1 GNAT family N-acetyltransferase -
  NQZ90_RS07820 (NQZ90_07820) - 1593906..1594181 (-) 276 WP_002936247.1 HU family DNA-binding protein -
  NQZ90_RS07825 (NQZ90_07825) - 1594271..1594867 (-) 597 WP_002936249.1 YpmS family protein -
  NQZ90_RS07830 (NQZ90_07830) - 1594839..1595672 (-) 834 WP_105115534.1 SGNH/GDSL hydrolase family protein -
  NQZ90_RS07835 (NQZ90_07835) - 1595665..1596498 (-) 834 WP_257110174.1 DegV family protein -
  NQZ90_RS07840 (NQZ90_07840) recN 1596592..1598253 (-) 1662 WP_257110175.1 DNA repair protein RecN Machinery gene
  NQZ90_RS07845 (NQZ90_07845) - 1598256..1598681 (-) 426 WP_002936261.1 arginine repressor -
  NQZ90_RS07850 (NQZ90_07850) - 1598674..1599495 (-) 822 WP_257110176.1 TlyA family RNA methyltransferase -
  NQZ90_RS07855 (NQZ90_07855) - 1599488..1600357 (-) 870 WP_257110177.1 polyprenyl synthetase family protein -
  NQZ90_RS07860 (NQZ90_07860) - 1600357..1600572 (-) 216 WP_002936269.1 exodeoxyribonuclease VII small subunit -
  NQZ90_RS07865 (NQZ90_07865) xseA 1600547..1601890 (-) 1344 WP_257110178.1 exodeoxyribonuclease VII large subunit -
  NQZ90_RS07870 (NQZ90_07870) - 1602057..1602965 (+) 909 WP_024413789.1 neutral zinc metallopeptidase -

Sequence

Protein


Download         Length: 553 a.a.        Molecular weight: 62688.92 Da        Isoelectric Point: 4.6542

>NTDB_id=615603 NQZ90_RS07840 WP_257110175.1 1596592..1598253(-) (recN) [Streptococcus suis strain DNC15]
MLLEVSIKNFAIIEQVSLNFENGMTILSGETGAGKSIIIDAMNLMLGARATTDVIRHGAAKAEIEGLFSFENSRALEQIL
LEQGIEVADELIIRREILQNGRSVSRVNGQMVNLSVLKQIGQYLVDIHGQHDQEELMKSQHHIRLLDSFGEDGFWSLKDR
YQTIFDAYRSLRKRVLEKQKNEQEHKARIEMLEYQIAEIEAADLKSGEDIQLNQERDKLLNHKQIADTLTNAYALLDNED
FSSLNNLRSAMSDLQSLEEFDPDYKQLSSSLTEAYYVVEDVTKRLSDVVDNLDFDGNRLMQLESRLDLLNTITKKYGGTV
DDVLDYFSKISEEYNLLTGNDLSGDDLEVQLKNLEKELVERAGQLSESRHELAVVLEDIIRQELQDLYMEKARFQVRFTK
GKFNREGNETVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFARKEGKTSIVFDEVDTGVSGRVAQAIAQKIYKIG
QYGQVLAISHLPQVIAIADYQFFIEKISDEHSTVSRVRLLTKEERIEEIAKMLAGDKITDAARNQAKELVEKG

Nucleotide


Download         Length: 1662 bp        

>NTDB_id=615603 NQZ90_RS07840 WP_257110175.1 1596592..1598253(-) (recN) [Streptococcus suis strain DNC15]
ATGTTACTAGAAGTGTCCATTAAAAACTTCGCCATTATTGAGCAGGTATCACTGAATTTTGAAAACGGGATGACCATACT
TTCTGGTGAAACAGGTGCCGGCAAGTCCATTATCATCGACGCCATGAACCTGATGCTAGGGGCGCGTGCGACGACAGATG
TTATCAGACATGGGGCCGCCAAGGCTGAGATTGAAGGGCTCTTTTCCTTTGAAAATAGCAGAGCTCTCGAGCAGATTTTG
CTTGAACAGGGGATTGAAGTAGCTGACGAGCTCATTATCCGTCGTGAAATCCTACAAAATGGCCGTTCGGTCAGCCGTGT
CAATGGACAAATGGTCAATTTATCTGTCTTGAAACAGATTGGGCAATATTTAGTAGATATTCATGGTCAACATGACCAGG
AAGAATTGATGAAATCCCAGCACCATATCCGTCTTTTGGACAGTTTCGGAGAAGATGGATTTTGGAGTCTTAAAGACCGT
TATCAGACAATCTTTGATGCCTATCGTAGTCTTCGCAAACGAGTTCTTGAAAAGCAAAAAAATGAGCAAGAACACAAGGC
GCGGATTGAGATGCTAGAATACCAAATTGCTGAAATCGAAGCAGCAGATTTGAAGTCTGGCGAAGATATTCAACTCAATC
AGGAACGCGATAAACTACTCAACCACAAACAAATTGCAGATACACTGACCAATGCCTATGCACTGTTAGACAATGAAGAT
TTTTCAAGCTTGAACAACCTACGCTCAGCTATGAGTGACTTGCAAAGTCTGGAAGAATTTGATCCAGACTACAAACAGCT
CTCTTCTAGCCTGACAGAAGCTTATTATGTCGTTGAAGATGTGACCAAGCGTCTCAGCGATGTGGTCGATAATCTAGATT
TTGACGGCAATCGTCTCATGCAATTGGAAAGTCGTCTGGATTTGCTCAATACCATTACGAAGAAATATGGCGGAACTGTC
GATGATGTTTTGGACTATTTTAGTAAAATCAGTGAAGAATACAATTTATTGACAGGCAATGATTTATCTGGTGATGATTT
GGAAGTTCAGCTTAAGAACTTAGAGAAAGAATTGGTTGAACGAGCAGGTCAGCTCAGCGAATCACGCCATGAATTGGCTG
TTGTTTTAGAAGATATTATTCGCCAAGAATTGCAAGACTTGTATATGGAGAAAGCTCGTTTCCAAGTTCGATTTACTAAA
GGAAAATTTAATCGAGAAGGAAATGAAACAGTAGAATTTTACATCTCTACCAACCCAGGTGAAGACTTCAAGCCTCTGGT
TAAGGTGGCTTCTGGAGGAGAATTGTCTCGCTTGATGTTGGCCATTAAGTCAGCCTTTGCCCGTAAAGAAGGTAAAACTT
CTATTGTCTTTGATGAGGTGGATACAGGGGTGTCTGGACGTGTGGCCCAGGCAATTGCCCAGAAAATTTATAAAATCGGA
CAATATGGTCAAGTATTGGCGATTTCTCATCTACCACAAGTCATTGCTATTGCAGATTATCAGTTCTTTATTGAGAAAAT
ATCCGACGAACATTCGACTGTTTCTCGTGTCCGTCTCTTGACCAAAGAAGAGCGTATTGAGGAAATTGCCAAGATGTTAG
CCGGTGACAAAATCACAGATGCAGCCCGTAATCAAGCAAAAGAATTAGTAGAAAAAGGTTAG

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.333

100

0.447