Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   NQZ90_RS05285 Genome accession   NZ_CP102148
Coordinates   1087450..1089186 (-) Length   578 a.a.
NCBI ID   WP_014637988.1    Uniprot ID   -
Organism   Streptococcus suis strain DNC15     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1082450..1094186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ90_RS05265 (NQZ90_05265) - 1083115..1083967 (-) 853 Protein_991 IS982 family transposase -
  NQZ90_RS05270 (NQZ90_05270) trmD 1084331..1085052 (-) 722 Protein_992 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  NQZ90_RS05275 (NQZ90_05275) rimM 1085042..1085560 (-) 519 WP_014637986.1 ribosome maturation factor RimM -
  NQZ90_RS05280 (NQZ90_05280) rcrQ 1085681..1087441 (-) 1761 WP_257110426.1 ABC transporter ATP-binding protein Regulator
  NQZ90_RS05285 (NQZ90_05285) rcrP 1087450..1089186 (-) 1737 WP_014637988.1 ABC transporter ATP-binding protein Regulator
  NQZ90_RS05290 (NQZ90_05290) - 1089262..1089504 (-) 243 WP_012028079.1 KH domain-containing protein -
  NQZ90_RS05295 (NQZ90_05295) rpsP 1089526..1089798 (-) 273 WP_002940682.1 30S ribosomal protein S16 -
  NQZ90_RS05300 (NQZ90_05300) - 1089923..1090231 (-) 309 WP_181728947.1 DUF4298 domain-containing protein -
  NQZ90_RS05305 (NQZ90_05305) pcp 1090231..1090878 (-) 648 WP_002940685.1 pyroglutamyl-peptidase I -
  NQZ90_RS05310 (NQZ90_05310) - 1090875..1091630 (-) 756 WP_203200545.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 65078.39 Da        Isoelectric Point: 5.1942

>NTDB_id=615590 NQZ90_RS05285 WP_014637988.1 1087450..1089186(-) (rcrP) [Streptococcus suis strain DNC15]
MNLIWTYLKKYPKWIALDLLGALLFVVVNLGLPTFLARMIDQGITKNDVSQLYFWAGMMGLIVLLGIVGRVTLAYAAGKL
TTNIVKDIRNDLYEKIQDYSHHEYEQIGVSSLVARMTNDAFVLMQFSEMVLKLGIITPLMMIASVIMTLVTSPSLAWTVA
VAMPFLVFVIFYVATKTRPLSEKQQKRLDTINQYVRENLMGLRVIRAFTREEFQEERFESVNEEYTDISKKLFNLTGLTE
PLFVQIIIAMIVAIVWFALAPLQTGSLQIGDLVAFIEYSFHALFSFLLFANLFNMYPRMSVSSQRIQEVLDMPISISKNE
EGITETDTRGYLEFENVTFAYPGETESPVLHNISFKAKPGETIAFIGSTGSGKSSLVNLIPRFYDVTLGRILVDGVDVRR
YNLKALRSKIGFIPQKALLFTGTIAENLKYGKMDASLAELHDATDVAQAKEFIESKEEKFDTHLAEGGSNLSGGQKQRLS
IARAIVKQPDIYIFDDSFSALDYKTDAILRSRLKEVTENATVLIVAQRVGTIMDADQIIVLNEGEIVGRGTHNELMESNE
IYREIANSQLNRQSLTEE

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=615590 NQZ90_RS05285 WP_014637988.1 1087450..1089186(-) (rcrP) [Streptococcus suis strain DNC15]
ATGAATCTGATTTGGACCTATTTGAAAAAATATCCTAAGTGGATTGCCTTAGACTTGTTGGGGGCCTTATTGTTTGTAGT
GGTAAACTTGGGCTTGCCAACTTTTTTGGCTAGGATGATTGACCAAGGAATTACAAAGAACGATGTTAGTCAGCTCTATT
TCTGGGCGGGGATGATGGGATTGATTGTCCTGCTCGGGATTGTTGGTCGAGTGACACTTGCCTATGCAGCTGGAAAATTG
ACTACCAATATCGTCAAAGATATTCGAAATGATTTGTATGAGAAAATTCAGGACTATTCTCATCACGAATATGAGCAGAT
TGGTGTTTCTTCTCTAGTTGCTCGTATGACAAATGATGCTTTTGTTCTCATGCAATTCTCTGAAATGGTCTTAAAACTAG
GTATTATTACACCCTTGATGATGATTGCTTCTGTCATCATGACCTTGGTAACCAGTCCGAGCTTAGCCTGGACAGTAGCA
GTAGCCATGCCATTTTTGGTTTTCGTCATTTTTTATGTAGCTACTAAAACTCGTCCTCTTTCTGAAAAGCAACAAAAACG
ATTGGACACCATTAACCAATATGTTCGCGAAAATCTCATGGGCTTGCGTGTCATTCGTGCCTTTACTCGTGAGGAGTTTC
AAGAGGAGCGCTTTGAGTCGGTCAATGAGGAATATACCGATATTTCCAAAAAGCTCTTTAATCTGACTGGATTGACAGAG
CCGCTCTTTGTCCAGATTATTATTGCTATGATTGTAGCCATTGTCTGGTTCGCATTGGCTCCTTTGCAAACAGGCAGTCT
GCAAATCGGTGATTTGGTAGCCTTTATCGAATATAGTTTCCACGCGCTTTTCTCATTCTTGCTCTTTGCTAACTTGTTTA
ACATGTATCCACGTATGTCGGTATCGAGCCAACGGATTCAGGAAGTCTTGGACATGCCCATTTCCATTTCTAAGAATGAA
GAAGGTATTACTGAAACAGATACTCGTGGTTATTTGGAATTTGAAAATGTAACTTTTGCCTACCCTGGTGAAACGGAATC
GCCTGTGCTGCACAATATTTCCTTCAAAGCTAAGCCTGGTGAAACGATTGCCTTTATTGGTTCGACTGGTTCTGGTAAGT
CTTCCTTGGTCAACTTGATTCCACGTTTCTATGATGTGACACTTGGTCGTATCTTGGTGGACGGTGTGGATGTCAGACGC
TACAATCTAAAGGCACTCCGCAGCAAGATTGGCTTTATTCCGCAGAAAGCTCTGCTATTTACCGGAACTATCGCGGAAAA
CTTAAAGTACGGTAAGATGGATGCTAGTCTTGCAGAACTTCATGATGCGACGGATGTGGCTCAGGCTAAGGAGTTTATCG
AGAGTAAGGAAGAAAAATTCGACACCCATCTAGCAGAAGGTGGAAGCAACCTGTCAGGCGGGCAAAAGCAACGTTTGTCC
ATTGCACGTGCTATTGTGAAACAGCCCGATATTTATATTTTTGATGATTCTTTCTCAGCATTGGATTATAAGACGGATGC
AATTTTGCGGAGTCGTTTGAAGGAAGTGACGGAAAATGCGACGGTGCTAATTGTGGCACAACGTGTCGGAACCATTATGG
ATGCCGACCAGATCATCGTGCTGAACGAAGGTGAAATCGTTGGCCGCGGCACCCACAATGAATTGATGGAAAGCAATGAG
ATTTACCGAGAAATCGCCAATTCTCAGCTTAACCGTCAATCTCTGACAGAAGAATAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(20-280)

ABC transporter (ABC_tran)

(350-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

38.605

100

0.393