Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   NQZ90_RS05280 Genome accession   NZ_CP102148
Coordinates   1085681..1087441 (-) Length   586 a.a.
NCBI ID   WP_257110426.1    Uniprot ID   -
Organism   Streptococcus suis strain DNC15     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1080681..1092441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ90_RS05265 (NQZ90_05265) - 1083115..1083967 (-) 853 Protein_991 IS982 family transposase -
  NQZ90_RS05270 (NQZ90_05270) trmD 1084331..1085052 (-) 722 Protein_992 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  NQZ90_RS05275 (NQZ90_05275) rimM 1085042..1085560 (-) 519 WP_014637986.1 ribosome maturation factor RimM -
  NQZ90_RS05280 (NQZ90_05280) rcrQ 1085681..1087441 (-) 1761 WP_257110426.1 ABC transporter ATP-binding protein Regulator
  NQZ90_RS05285 (NQZ90_05285) rcrP 1087450..1089186 (-) 1737 WP_014637988.1 ABC transporter ATP-binding protein Regulator
  NQZ90_RS05290 (NQZ90_05290) - 1089262..1089504 (-) 243 WP_012028079.1 KH domain-containing protein -
  NQZ90_RS05295 (NQZ90_05295) rpsP 1089526..1089798 (-) 273 WP_002940682.1 30S ribosomal protein S16 -
  NQZ90_RS05300 (NQZ90_05300) - 1089923..1090231 (-) 309 WP_181728947.1 DUF4298 domain-containing protein -
  NQZ90_RS05305 (NQZ90_05305) pcp 1090231..1090878 (-) 648 WP_002940685.1 pyroglutamyl-peptidase I -
  NQZ90_RS05310 (NQZ90_05310) - 1090875..1091630 (-) 756 WP_203200545.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 65548.41 Da        Isoelectric Point: 5.2569

>NTDB_id=615589 NQZ90_RS05280 WP_257110426.1 1085681..1087441(-) (rcrQ) [Streptococcus suis strain DNC15]
MKNRSVFTRVWDYLRRYQSSVFLAVFLKTISAVMNALEPFVLGLIITELTKNLLDIANGVEGAQINYSYIAIMLAIYALR
ALLYEIGAYGSNYFMTKAVQGATKELRQDLSHKINKIPVSYFDKHQYGDLLGRFTSDVETVSNALQQSFLQLVNAVLTLS
LAIFMCFWLDVSLALVVVTLVPVTYFGSKFVMGKSQPYFKQQADALGRLNGFVQENLTGFNVLKLYGREEISTEEFRQIT
ADLQEVGFKASFMSGLLMPLVHGFSNIAYVVVALLSGLKVLAGTLTVGNMQAFVQYVWQISQPVQTLTQLAPQLQSAKSS
LERIFSVLDELDEEDANALELTESLTGQVSFEQVEFGYSENKPLIRNFNLDVQPGEMVAIVGPTGAGKTTLINLLMRFYD
VTSGSIKVDGQDIRNLSRQSYRSQFGMVLQDAWLYEGTIKENLRFGRLDATDEEIVEAAKTANVDHFIRTLPGGYNMEMN
QESSNISQGQKQLLTIARALLADPAILILDEATSSVDTRLELLIQKAMKRLMKGRTSFVIAHRLSTIQEADKILVLKDGQ
IIEQGNHESLLADKGFYYNLYQSQFS

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=615589 NQZ90_RS05280 WP_257110426.1 1085681..1087441(-) (rcrQ) [Streptococcus suis strain DNC15]
ATGAAGAATAGATCAGTATTTACCCGTGTTTGGGACTATTTGCGTCGTTACCAATCTTCTGTATTTTTAGCCGTTTTTCT
AAAGACCATCAGTGCAGTTATGAATGCCTTGGAGCCCTTTGTACTGGGGCTTATCATTACAGAATTGACCAAGAATCTGT
TGGATATTGCTAATGGAGTAGAAGGAGCGCAGATTAACTATTCCTACATTGCCATCATGCTTGCCATCTATGCCCTTCGT
GCCCTTCTATATGAAATCGGTGCCTACGGTTCTAACTATTTTATGACCAAGGCAGTGCAGGGAGCAACTAAGGAACTACG
TCAGGACTTGAGCCACAAAATTAACAAGATTCCAGTATCTTATTTTGACAAGCACCAGTATGGTGATTTACTCGGACGTT
TTACAAGCGATGTGGAGACTGTTTCAAACGCCCTGCAACAAAGTTTTCTCCAGCTAGTCAATGCCGTTCTGACCCTCTCG
CTAGCCATTTTCATGTGTTTCTGGTTGGATGTATCCCTAGCACTTGTAGTCGTAACCTTGGTTCCAGTGACCTATTTTGG
TTCCAAGTTTGTCATGGGCAAATCCCAGCCATATTTCAAGCAGCAGGCTGATGCCCTAGGTCGTTTGAACGGCTTTGTCC
AAGAAAATCTAACTGGTTTTAACGTTCTCAAACTTTACGGCCGTGAAGAAATTTCTACAGAAGAGTTTCGCCAGATTACC
GCAGATTTGCAGGAAGTTGGTTTCAAGGCTAGTTTCATGTCTGGTTTGCTCATGCCTCTAGTTCACGGCTTCTCAAACAT
CGCCTATGTCGTCGTTGCCCTGCTTTCTGGTTTGAAAGTTCTTGCAGGTACATTGACGGTGGGTAATATGCAGGCCTTCG
TCCAATACGTCTGGCAGATTTCTCAGCCAGTCCAAACTTTGACCCAATTGGCACCACAGTTGCAGTCTGCCAAATCTTCC
CTTGAACGCATCTTTTCAGTCTTAGATGAGCTTGACGAAGAAGACGCCAATGCACTAGAGTTGACAGAAAGTCTGACCGG
ACAAGTCAGCTTTGAGCAGGTCGAATTTGGCTATTCAGAAAACAAGCCGCTCATCCGTAACTTTAATCTGGATGTTCAAC
CCGGTGAGATGGTGGCCATCGTTGGTCCAACAGGGGCAGGTAAGACTACTCTTATCAACTTGCTCATGCGTTTCTACGAT
GTGACATCAGGTTCTATCAAAGTGGATGGTCAGGACATTCGAAATCTTTCACGTCAATCCTACCGTAGTCAATTTGGTAT
GGTCTTGCAAGATGCTTGGCTCTATGAAGGAACCATAAAGGAAAACCTGCGTTTTGGACGACTGGATGCGACGGATGAGG
AAATTGTGGAGGCTGCTAAAACTGCCAACGTTGACCATTTTATCCGTACCCTACCTGGTGGTTATAATATGGAAATGAAC
CAGGAATCCAGCAATATTTCCCAAGGTCAGAAACAGCTTTTGACCATTGCGCGTGCCTTGTTGGCGGATCCTGCTATTCT
GATTCTTGACGAAGCGACTTCTTCAGTTGATACCCGTTTGGAACTCTTGATTCAAAAGGCTATGAAAAGGTTGATGAAAG
GGCGGACAAGTTTCGTCATCGCTCATCGCTTATCTACCATTCAGGAAGCTGATAAGATTTTGGTCTTGAAAGATGGACAG
ATTATCGAACAAGGTAACCATGAAAGTCTTTTGGCAGACAAAGGTTTCTATTACAATCTTTATCAAAGTCAGTTTAGCTA
A

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(21-304)

ABC transporter (ABC_tran)

(366-514)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

42.954

100

0.432