Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   NQZ90_RS04930 Genome accession   NZ_CP102148
Coordinates   1011625..1012293 (+) Length   222 a.a.
NCBI ID   WP_257110405.1    Uniprot ID   -
Organism   Streptococcus suis strain DNC15     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1006625..1017293
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ90_RS04900 (NQZ90_04900) - 1007723..1007863 (+) 141 WP_032500796.1 hypothetical protein -
  NQZ90_RS04905 (NQZ90_04905) - 1007876..1008259 (+) 384 WP_257110402.1 NisI/SpaI family lantibiotic immunity lipoprotein -
  NQZ90_RS04910 (NQZ90_04910) - 1008276..1009028 (+) 753 WP_257110403.1 ABC transporter ATP-binding protein -
  NQZ90_RS04915 (NQZ90_04915) - 1009029..1010999 (+) 1971 WP_257110404.1 ABC transporter permease -
  NQZ90_RS04920 (NQZ90_04920) relB 1011091..1011330 (+) 240 WP_015646833.1 type II toxin-antitoxin system RelB family antitoxin -
  NQZ90_RS04925 (NQZ90_04925) - 1011371..1011586 (+) 216 WP_371314982.1 type II toxin-antitoxin system RelE/ParE family toxin -
  NQZ90_RS04930 (NQZ90_04930) braR 1011625..1012293 (+) 669 WP_257110405.1 response regulator transcription factor Regulator
  NQZ90_RS04935 (NQZ90_04935) - 1012290..1013231 (+) 942 WP_257110406.1 sensor histidine kinase -
  NQZ90_RS04940 (NQZ90_04940) - 1013308..1014816 (+) 1509 WP_257110407.1 phosphomannomutase/phosphoglucomutase -
  NQZ90_RS04945 (NQZ90_04945) xerS 1014879..1015949 (-) 1071 WP_257110408.1 tyrosine recombinase XerS Machinery gene
  NQZ90_RS04950 (NQZ90_04950) - 1016098..1016619 (-) 522 WP_105159208.1 AAA family ATPase -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25549.42 Da        Isoelectric Point: 4.7792

>NTDB_id=615586 NQZ90_RS04930 WP_257110405.1 1011625..1012293(+) (braR) [Streptococcus suis strain DNC15]
MMKKEKIYIVEDDEMIVQLLKQHLGKSYQVESVQNFRAVSQEVAEIKPDLVLMDISLPYYNGFYWTTEIRKTMTMPIIFI
SSSDDEMNAVMAMNMGGDDFVSKPFSLGILDAKIGAFLRRVNQFSKSSELSIDQFLLSLDGRFSNESEQVQLSPTETKIL
SALLERQGQIVSKDELLEKLWENEEFIDQNTLNVNMTRLRKKVSEVGFERIHTVRGLGYLVK

Nucleotide


Download         Length: 669 bp        

>NTDB_id=615586 NQZ90_RS04930 WP_257110405.1 1011625..1012293(+) (braR) [Streptococcus suis strain DNC15]
ATGATGAAAAAAGAGAAGATTTATATTGTTGAAGACGATGAGATGATTGTCCAGCTCTTGAAGCAGCACCTAGGCAAATC
GTATCAGGTGGAAAGTGTGCAGAATTTCCGAGCAGTCAGTCAGGAAGTGGCGGAAATCAAACCAGACTTAGTGCTGATGG
ACATTAGCCTGCCTTATTACAACGGTTTTTATTGGACGACAGAAATCCGTAAAACCATGACCATGCCGATTATTTTTATT
TCCTCTAGCGATGATGAAATGAATGCGGTCATGGCTATGAACATGGGTGGCGATGATTTTGTGTCTAAGCCGTTTTCTCT
GGGAATTTTGGATGCCAAAATCGGAGCCTTCCTGCGTCGGGTCAATCAATTCAGCAAATCGAGCGAATTGTCTATCGATC
AGTTCCTGCTTAGTTTGGACGGGCGATTTTCAAATGAATCGGAACAGGTTCAATTGTCTCCTACGGAAACCAAGATTTTG
TCCGCCTTACTAGAACGACAAGGGCAGATTGTCAGCAAGGACGAACTCTTGGAAAAACTCTGGGAAAATGAAGAATTTAT
CGACCAAAATACGCTCAATGTCAACATGACCAGGCTGCGGAAGAAGGTGAGCGAGGTCGGTTTTGAACGAATTCATACGG
TTCGTGGATTGGGGTACTTAGTCAAATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(148-220)

Response regulator receiver domain (Response_reg)

(7-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

46.364

99.099

0.459