Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutX   Type   Machinery gene
Locus tag   NQZ90_RS03825 Genome accession   NZ_CP102148
Coordinates   788439..788921 (-) Length   160 a.a.
NCBI ID   WP_172087199.1    Uniprot ID   -
Organism   Streptococcus suis strain DNC15     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 783439..793921
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ90_RS03800 (NQZ90_03800) pheT 783754..786153 (+) 2400 WP_105141591.1 phenylalanine--tRNA ligase subunit beta -
  NQZ90_RS03805 (NQZ90_03805) - 786208..786474 (+) 267 WP_105105171.1 DUF2087 domain-containing protein -
  NQZ90_RS03810 (NQZ90_03810) - 786495..786797 (-) 303 WP_023369992.1 hypothetical protein -
  NQZ90_RS03815 (NQZ90_03815) - 786986..787729 (+) 744 WP_105120982.1 polyphosphate polymerase domain-containing protein -
  NQZ90_RS03820 (NQZ90_03820) - 787716..788393 (+) 678 WP_024388452.1 DUF4956 domain-containing protein -
  NQZ90_RS03825 (NQZ90_03825) mutX 788439..788921 (-) 483 WP_172087199.1 8-oxo-dGTP diphosphatase Machinery gene
  NQZ90_RS03830 (NQZ90_03830) folE 789110..789673 (+) 564 WP_002938082.1 GTP cyclohydrolase I FolE -
  NQZ90_RS03835 (NQZ90_03835) folP 789682..790494 (+) 813 WP_172087197.1 dihydropteroate synthase -
  NQZ90_RS03840 (NQZ90_03840) folB 790487..790849 (+) 363 WP_012027113.1 dihydroneopterin aldolase -
  NQZ90_RS03845 (NQZ90_03845) folK 790846..791334 (+) 489 WP_023369979.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  NQZ90_RS03850 (NQZ90_03850) - 791385..792695 (+) 1311 WP_024384802.1 GntP family permease -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 18568.90 Da        Isoelectric Point: 4.4960

>NTDB_id=615577 NQZ90_RS03825 WP_172087199.1 788439..788921(-) (mutX) [Streptococcus suis strain DNC15]
MTKKPVQLATICYIDNGKEFLLLHRNKKENDVHQGKWIGVGGKLEPGETPQACAIREVFEETGLTVTKHALKGVITFPDF
TPNTDWYTYVFRITGFEGSLIDCNEGDLEWVPYDQVLSKPTWEGDRHFQEWLLEDKPFFSACFRYDGDKLLDYSVDFYEE

Nucleotide


Download         Length: 483 bp        

>NTDB_id=615577 NQZ90_RS03825 WP_172087199.1 788439..788921(-) (mutX) [Streptococcus suis strain DNC15]
ATGACCAAGAAACCCGTCCAACTCGCTACGATTTGCTACATTGATAATGGCAAGGAATTTCTTCTCCTTCATCGAAACAA
GAAAGAAAACGATGTCCATCAAGGGAAATGGATTGGAGTTGGTGGCAAACTAGAACCCGGCGAAACGCCACAGGCCTGTG
CCATTCGAGAAGTCTTTGAGGAAACTGGGCTTACTGTAACAAAGCATGCTCTAAAAGGAGTCATCACCTTTCCAGACTTC
ACCCCAAACACTGACTGGTATACCTATGTCTTTAGGATAACTGGTTTTGAAGGAAGTTTGATCGATTGCAACGAAGGCGA
TTTAGAATGGGTTCCTTATGACCAAGTCTTGTCCAAACCAACTTGGGAGGGCGACCGGCATTTTCAAGAATGGCTATTAG
AGGACAAACCATTTTTTTCCGCTTGCTTCCGCTATGATGGGGACAAACTGCTTGATTATAGCGTTGATTTTTATGAAGAA
TAA

Domains

Predicted by InterProScan.

NUDIX domain (NUDIX)

(8-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutX Streptococcus pneumoniae R6

80.392

95.625

0.769