Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   NQZ91_RS10325 Genome accession   NZ_CP102145
Coordinates   2060734..2062395 (+) Length   553 a.a.
NCBI ID   WP_257117503.1    Uniprot ID   -
Organism   Streptococcus suis strain DNS20     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2055734..2067395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ91_RS10295 (NQZ91_10295) - 2056022..2056945 (-) 924 WP_105111906.1 neutral zinc metallopeptidase -
  NQZ91_RS10300 (NQZ91_10300) xseA 2057090..2058433 (+) 1344 WP_257117498.1 exodeoxyribonuclease VII large subunit -
  NQZ91_RS10305 (NQZ91_10305) - 2058408..2058623 (+) 216 WP_105123503.1 exodeoxyribonuclease VII small subunit -
  NQZ91_RS10310 (NQZ91_10310) - 2058626..2059498 (+) 873 WP_257117499.1 polyprenyl synthetase family protein -
  NQZ91_RS10315 (NQZ91_10315) - 2059491..2060312 (+) 822 WP_257117501.1 TlyA family RNA methyltransferase -
  NQZ91_RS10320 (NQZ91_10320) - 2060305..2060730 (+) 426 WP_172009235.1 arginine repressor -
  NQZ91_RS10325 (NQZ91_10325) recN 2060734..2062395 (+) 1662 WP_257117503.1 DNA repair protein RecN Machinery gene
  NQZ91_RS10330 (NQZ91_10330) - 2062552..2062935 (+) 384 WP_257117505.1 hypothetical protein -
  NQZ91_RS10335 (NQZ91_10335) - 2063088..2063921 (+) 834 WP_257117507.1 DegV family protein -
  NQZ91_RS10340 (NQZ91_10340) - 2063914..2064744 (+) 831 WP_257104755.1 SGNH/GDSL hydrolase family protein -
  NQZ91_RS10345 (NQZ91_10345) - 2064722..2065321 (+) 600 WP_172009244.1 YpmS family protein -
  NQZ91_RS10350 (NQZ91_10350) - 2065407..2065682 (+) 276 WP_105106668.1 HU family DNA-binding protein -
  NQZ91_RS10355 (NQZ91_10355) yidC 2066165..2067076 (-) 912 WP_306455663.1 membrane protein insertase YidC -

Sequence

Protein


Download         Length: 553 a.a.        Molecular weight: 62428.71 Da        Isoelectric Point: 4.6505

>NTDB_id=615524 NQZ91_RS10325 WP_257117503.1 2060734..2062395(+) (recN) [Streptococcus suis strain DNS20]
MLLEVSIKNFAIIEQVSLNFEKGMTILSGETGAGKSIIIDAMNLMLGARATTDVIRHGAAKAEIEGLFSFEHSRALEQIL
EEQGIEVADELIIRREILQNGRSVSRVNGQMVNLSVLKQIGQHLVDIHGQHDQEELMKSQHHIRLLDSFGEEDFWTLKDN
YQATFDAYRSLRKRVLEKQKNEQEHKSRIEMLEYQIAEIESADLQLGEDIQLNQERDKLLNHKQIADTLTNAYALLDNED
FSSVNNIRSAMGDLQSLEEFDPEYKALSTSLTEAYYVMEDVAKRLGDVVDNLEFDGNRLMQLESRLDLLNTMTKKYGGSV
DDVLDYLAKITEEYNLLTGNDLSGDDLEVQLKTLEKDLVNLAGQLSQARHELAQILEEVIRQELQDLYMEKAKFQVRFTK
GKFSKEGHETVEFYISANPGEDFKPLVKVASGGELSRLMLAIKSAFARKEGKTSIVFDEVDTGVSGRVAQAIAQKIYKIG
QYGQVLAISHLPQVIAIADYQFFIEKVSDEHSTVSRVRLLTTDERVEEIAKMLAGDTVTEAARTQARELVMKG

Nucleotide


Download         Length: 1662 bp        

>NTDB_id=615524 NQZ91_RS10325 WP_257117503.1 2060734..2062395(+) (recN) [Streptococcus suis strain DNS20]
ATGTTACTAGAAGTTTCGATTAAGAATTTTGCCATTATCGAGCAGGTCTCTCTTAACTTTGAAAAGGGTATGACCATTCT
CTCTGGTGAGACGGGAGCTGGGAAGTCTATCATTATCGACGCCATGAACCTTATGTTGGGGGCGCGGGCGACTACTGATG
TCATCCGCCACGGGGCTGCCAAGGCGGAGATTGAGGGGCTTTTCTCTTTTGAACATAGCAGAGCCTTGGAGCAGATTTTG
GAGGAGCAGGGGATTGAAGTGGCTGACGAGCTGATTATCCGTCGGGAAATCCTGCAAAATGGTCGGTCGGTCAGCCGGGT
CAACGGTCAAATGGTCAACCTGTCTGTCCTCAAGCAAATTGGTCAGCACTTGGTCGACATTCACGGTCAACATGACCAGG
AAGAATTGATGAAGTCCCAGCACCATATCCGTCTGTTGGATAGCTTTGGAGAAGAGGATTTTTGGACCCTCAAGGACAAC
TACCAAGCGACTTTTGATGCCTACCGTAGCCTCCGCAAGCGCGTGCTTGAAAAGCAGAAAAACGAGCAGGAACACAAGTC
TCGTATCGAGATGTTGGAGTATCAGATTGCGGAGATTGAATCCGCTGACCTCCAGCTTGGTGAGGATATCCAGCTCAATC
AGGAGCGGGATAAGCTACTCAATCATAAGCAGATTGCAGATACGCTGACCAATGCCTACGCCCTCCTGGACAATGAGGAT
TTCTCCAGCGTCAACAATATCCGCTCAGCCATGGGGGATTTGCAGAGTTTGGAAGAATTCGACCCAGAATACAAGGCCCT
ATCGACCAGCCTGACCGAGGCCTACTATGTGATGGAGGATGTGGCCAAGCGATTGGGTGATGTGGTGGACAATTTGGAGT
TTGACGGCAACCGTCTCATGCAGCTGGAAAGTCGCTTAGACCTGCTCAACACCATGACCAAGAAATATGGCGGTTCGGTC
GACGATGTCCTCGATTATTTGGCAAAAATCACTGAAGAGTACAATCTTTTGACCGGTAACGACCTGTCTGGTGATGACCT
GGAAGTCCAGCTCAAGACCTTGGAGAAAGACTTGGTTAACTTGGCTGGTCAATTGAGTCAGGCCCGTCATGAGTTGGCCC
AGATTTTAGAAGAGGTTATTCGCCAGGAATTGCAGGACTTGTATATGGAGAAGGCCAAGTTCCAGGTTCGATTTACTAAG
GGTAAATTCAGCAAGGAGGGCCATGAAACGGTGGAATTTTATATTTCTGCCAATCCTGGAGAGGATTTCAAACCCCTGGT
CAAGGTGGCCTCAGGAGGAGAATTGTCTCGCCTCATGTTGGCCATTAAATCAGCCTTTGCCCGCAAGGAAGGCAAGACAT
CCATTGTATTTGACGAGGTGGACACGGGTGTATCTGGTCGCGTAGCCCAGGCCATTGCCCAGAAAATTTACAAAATCGGT
CAATACGGTCAGGTCTTGGCGATTTCGCACTTGCCACAGGTGATTGCGATTGCGGATTACCAGTTTTTTATTGAGAAAGT
ATCGGACGAGCATTCGACCGTTTCTCGTGTGCGTCTCTTGACGACGGATGAACGGGTGGAAGAGATTGCCAAGATGTTGG
CTGGTGACACAGTGACGGAGGCAGCCAGAACGCAGGCCAGAGAATTAGTGATGAAAGGTTGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

42.857

100

0.439