Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   NQZ91_RS09765 Genome accession   NZ_CP102145
Coordinates   1948983..1949603 (-) Length   206 a.a.
NCBI ID   WP_105111215.1    Uniprot ID   -
Organism   Streptococcus suis strain DNS20     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1943983..1954603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ91_RS09750 (NQZ91_09750) - 1945108..1945941 (+) 834 WP_105111212.1 energy-coupling factor transporter transmembrane protein EcfT -
  NQZ91_RS09755 (NQZ91_09755) rsmG 1946048..1946761 (-) 714 WP_257104795.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  NQZ91_RS09760 (NQZ91_09760) pbp1a 1946834..1948951 (-) 2118 WP_394735675.1 penicillin-binding protein PBP1A -
  NQZ91_RS09765 (NQZ91_09765) recU 1948983..1949603 (-) 621 WP_105111215.1 Holliday junction resolvase RecU Machinery gene
  NQZ91_RS09770 (NQZ91_09770) - 1949675..1950211 (+) 537 WP_172059504.1 DUF1273 domain-containing protein -
  NQZ91_RS09775 (NQZ91_09775) gpsB 1950283..1950612 (+) 330 WP_105111217.1 cell division regulator GpsB -
  NQZ91_RS09785 (NQZ91_09785) - 1951058..1952206 (+) 1149 WP_172059477.1 class I SAM-dependent RNA methyltransferase -
  NQZ91_RS09790 (NQZ91_09790) - 1952224..1953648 (+) 1425 WP_257117455.1 cell division site-positioning protein MapZ family protein -
  NQZ91_RS09795 (NQZ91_09795) - 1953687..1953956 (-) 270 WP_125265384.1 hypothetical protein -
  NQZ91_RS09800 (NQZ91_09800) - 1953967..1954449 (-) 483 WP_105111221.1 S-ribosylhomocysteine lyase -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23608.99 Da        Isoelectric Point: 9.5787

>NTDB_id=615514 NQZ91_RS09765 WP_105111215.1 1948983..1949603(-) (recU) [Streptococcus suis strain DNS20]
MVNYPHQINRKITRTKKDSAKETVNFANRGMSFEAAINESNAYYLSHGIAVIHKKPTPVQIVKVDYPKRSRAKIVEAYFR
QASTTDYSGVFKGHYIDFEAKETRQKTSMPMKNFHAHQLEHMQEVVKQGGICFVLLHFSELKESYLLPAKELIDYYQAVQ
GNKSMPLHYVREHGYAFQLGTHPSVPYLTIVEEKLLGGDSVEKSNP

Nucleotide


Download         Length: 621 bp        

>NTDB_id=615514 NQZ91_RS09765 WP_105111215.1 1948983..1949603(-) (recU) [Streptococcus suis strain DNS20]
ATGGTCAATTATCCTCATCAGATAAATAGGAAAATCACTAGAACAAAAAAAGATTCTGCAAAGGAAACGGTTAATTTTGC
CAATCGTGGGATGTCCTTTGAAGCTGCTATCAATGAGAGCAATGCTTACTACCTTTCACATGGAATTGCGGTCATTCATA
AGAAACCAACACCTGTCCAGATTGTCAAGGTAGACTACCCAAAACGAAGTCGGGCCAAAATTGTCGAAGCTTATTTCAGA
CAGGCCTCAACAACGGACTATTCCGGCGTTTTCAAGGGACATTACATTGACTTTGAAGCCAAGGAAACCCGTCAGAAGAC
CTCCATGCCCATGAAAAACTTTCATGCCCACCAGTTGGAACATATGCAGGAAGTTGTCAAGCAAGGCGGTATCTGCTTTG
TCCTTCTACACTTTTCAGAATTAAAAGAATCTTACTTACTCCCGGCAAAAGAGCTGATAGATTACTATCAAGCTGTTCAG
GGCAATAAATCCATGCCCTTGCACTATGTTCGCGAGCATGGCTATGCCTTTCAGTTAGGGACCCATCCCAGCGTCCCCTA
TCTGACCATTGTCGAAGAAAAACTATTAGGTGGTGACTCAGTTGAAAAATCCAACCCTTAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(29-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

48.731

95.631

0.466