Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   NQZ91_RS08225 Genome accession   NZ_CP102145
Coordinates   1628067..1628516 (+) Length   149 a.a.
NCBI ID   WP_105160259.1    Uniprot ID   -
Organism   Streptococcus suis strain DNS20     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1623067..1633516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ91_RS08200 (NQZ91_08200) - 1623496..1624623 (+) 1128 WP_257104938.1 N-acetyldiaminopimelate deacetylase -
  NQZ91_RS08205 (NQZ91_08205) - 1624665..1625207 (+) 543 WP_105122342.1 5-formyltetrahydrofolate cyclo-ligase -
  NQZ91_RS08210 (NQZ91_08210) - 1625200..1625868 (+) 669 WP_398599395.1 rhomboid family intramembrane serine protease -
  NQZ91_RS08215 (NQZ91_08215) galU 1625887..1626789 (-) 903 WP_172022589.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  NQZ91_RS08220 (NQZ91_08220) - 1626829..1627845 (-) 1017 WP_105122344.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  NQZ91_RS08225 (NQZ91_08225) rcrR 1628067..1628516 (+) 450 WP_105160259.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  NQZ91_RS08230 (NQZ91_08230) - 1628509..1630215 (+) 1707 WP_172068316.1 ABC transporter ATP-binding protein -
  NQZ91_RS08235 (NQZ91_08235) - 1630216..1632000 (+) 1785 WP_257104937.1 ABC transporter ATP-binding protein -
  NQZ91_RS08240 (NQZ91_08240) - 1632065..1632598 (+) 534 WP_257104936.1 hypothetical protein -
  NQZ91_RS08245 (NQZ91_08245) - 1632627..1633070 (+) 444 WP_105160257.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 17358.89 Da        Isoelectric Point: 8.0771

>NTDB_id=615501 NQZ91_RS08225 WP_105160259.1 1628067..1628516(+) (rcrR) [Streptococcus suis strain DNS20]
MGDFLAEFRSLLNQVEQIGDKIAKEHGVEHLAGPQGWALLYLAKCSDKEVFVKDIEKEMKISKSVASNLVKRMEKNDFIQ
VIPSKQDKRYKQIILTANGQEKVSRLDDFHQELHQSLFNKITKEDFQLVKQWAHQLSDNIKEYKEKNNV

Nucleotide


Download         Length: 450 bp        

>NTDB_id=615501 NQZ91_RS08225 WP_105160259.1 1628067..1628516(+) (rcrR) [Streptococcus suis strain DNS20]
ATGGGAGATTTTTTAGCAGAATTTCGTTCCCTACTCAATCAGGTGGAACAGATTGGTGACAAGATTGCCAAGGAACATGG
TGTAGAGCATCTCGCTGGTCCTCAGGGATGGGCCTTGCTTTATCTAGCTAAGTGTTCTGACAAGGAAGTCTTTGTTAAGG
ACATTGAAAAAGAAATGAAAATTTCTAAATCAGTTGCTAGTAATCTGGTCAAACGAATGGAGAAAAATGATTTTATTCAA
GTCATTCCATCCAAGCAGGATAAGCGCTACAAGCAGATTATCCTGACGGCGAATGGGCAGGAAAAAGTTAGTCGCCTAGA
TGACTTCCATCAGGAGCTGCACCAATCATTGTTTAATAAGATTACAAAAGAAGATTTTCAATTGGTGAAGCAGTGGGCCC
ATCAATTATCTGATAATATTAAGGAATATAAGGAGAAGAACAATGTTTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(33-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

47.143

93.96

0.443