Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   NQZ91_RS06700 Genome accession   NZ_CP102145
Coordinates   1360605..1362575 (-) Length   656 a.a.
NCBI ID   WP_257117197.1    Uniprot ID   -
Organism   Streptococcus suis strain DNS20     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1355605..1367575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ91_RS06665 (NQZ91_06665) - 1355813..1356022 (-) 210 WP_257117190.1 heavy-metal-associated domain-containing protein -
  NQZ91_RS06670 (NQZ91_06670) - 1356025..1356465 (-) 441 WP_257117191.1 CopY/TcrY family copper transport repressor -
  NQZ91_RS06675 (NQZ91_06675) - 1356565..1358073 (-) 1509 WP_257117192.1 zinc ABC transporter substrate-binding protein AdcA -
  NQZ91_RS06680 (NQZ91_06680) - 1358082..1358894 (-) 813 WP_105111107.1 metal ABC transporter permease -
  NQZ91_RS06685 (NQZ91_06685) - 1358887..1359597 (-) 711 WP_257103935.1 metal ABC transporter ATP-binding protein -
  NQZ91_RS06690 (NQZ91_06690) - 1359597..1360040 (-) 444 WP_257117195.1 zinc-dependent MarR family transcriptional regulator -
  NQZ91_RS06695 (NQZ91_06695) - 1360270..1360533 (-) 264 WP_257117196.1 hypothetical protein -
  NQZ91_RS06700 (NQZ91_06700) recP/tkt 1360605..1362575 (-) 1971 WP_257117197.1 transketolase Machinery gene

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 70665.34 Da        Isoelectric Point: 4.6151

>NTDB_id=615471 NQZ91_RS06700 WP_257117197.1 1360605..1362575(-) (recP/tkt) [Streptococcus suis strain DNS20]
MSNLSVNAIRFLGIDAIEKSKSGHPGIVMGAAPMAYSLFTKELRVNPAQPNWINRDRFILSAGHGSMLLYGLLHLSGFED
VTIDEIKSFRQWGSKTPGHPEFGHTTGVDATTGPLGQGISTATGFAQAERYLAAKYNRDGFPIFDHYTYVICGDGDLMEG
VSAEAASYAGLQKLEKLIVLYDSNDINLDGETKDAFTENVRARYDAYGWHTDLVTDGTDVDAIFAAIEKAKTAGKPSLIE
IKTVIGYGSPNKAGSNAAHGAPLGPDEAEATRKALDWNYAPFEIPEEVYADFKENVADRGAAAYDAWVKLVEDYKAAYPE
LADEVTAILEGRELAELKPEDFPVYENGFSQATRNSSQDAINAAAAVLPNFFGGSADLAHSNMTVIKGEGLQDAANPLNR
NIQFGVREFAMGTILNGMAAHGGLRVFGGTFFVFSDYVKAAVRLSALQGLPVTYVFTHDSVAVGEDGPTHEPIEHLAGLR
AMPNLNVFRPADARETQAAWYLSLTSKSTPSALVLTRQNLTVEEGTDFDKVAKGAYVVYDTEGFDTILIASGSEVNLAVK
AAKELAAAGTKVRVVSVPSTELFDAQDAAYKEEILPNAIRRRLAIEMGATQGWYKYVGLDGKVLGIDTFGASAPAQTVID
NYGFTVENVVKLVNEL

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=615471 NQZ91_RS06700 WP_257117197.1 1360605..1362575(-) (recP/tkt) [Streptococcus suis strain DNS20]
ATGTCAAATCTTTCAGTCAATGCGATTCGTTTCCTTGGTATTGATGCCATTGAGAAATCGAAATCAGGTCACCCTGGCAT
CGTTATGGGTGCAGCCCCAATGGCTTACAGCCTCTTTACTAAGGAACTTCGTGTCAATCCAGCGCAACCAAACTGGATTA
ACCGTGACCGTTTCATCTTATCAGCTGGCCATGGCTCCATGCTTCTTTATGGCCTCCTTCATTTGTCAGGATTTGAAGAT
GTCACAATAGATGAAATCAAGAGTTTCCGTCAATGGGGGTCAAAAACACCTGGTCACCCAGAATTTGGTCATACAACAGG
TGTCGATGCGACAACTGGTCCGCTTGGACAAGGTATTTCAACTGCAACAGGTTTTGCGCAGGCAGAGCGTTACTTGGCGG
CTAAGTACAACCGCGACGGTTTCCCAATTTTTGACCACTATACCTATGTTATCTGTGGAGACGGCGACCTCATGGAAGGT
GTTTCAGCTGAGGCAGCGTCATACGCAGGTCTTCAGAAGCTTGAAAAACTCATCGTTCTTTACGATTCAAACGATATTAA
CTTGGACGGAGAGACCAAGGATGCCTTTACGGAAAATGTCCGTGCTCGCTACGATGCCTACGGTTGGCATACAGACCTTG
TGACCGATGGTACCGATGTAGATGCGATCTTTGCGGCCATTGAAAAAGCAAAAACAGCAGGCAAGCCATCTTTGATTGAA
ATCAAGACAGTGATTGGTTATGGTTCACCAAACAAGGCTGGTAGCAATGCGGCTCATGGTGCTCCACTTGGACCAGATGA
AGCAGAAGCAACTCGCAAGGCCTTGGATTGGAACTATGCTCCATTTGAGATTCCAGAAGAAGTCTACGCTGACTTCAAAG
AAAATGTGGCTGATCGTGGTGCAGCAGCTTACGACGCTTGGGTTAAATTGGTTGAAGACTACAAGGCTGCTTATCCAGAA
TTGGCAGATGAAGTGACAGCTATCTTGGAAGGCCGTGAATTGGCAGAGCTCAAGCCAGAAGACTTCCCAGTTTATGAAAA
TGGATTTTCACAAGCCACTCGTAACTCATCACAAGACGCTATCAACGCAGCAGCAGCTGTTTTGCCAAACTTCTTTGGTG
GTTCAGCCGACTTGGCTCACTCAAACATGACCGTTATCAAGGGCGAAGGCTTGCAAGATGCTGCAAATCCGCTCAATCGC
AACATCCAATTTGGTGTGCGTGAATTTGCGATGGGTACGATCTTGAACGGTATGGCAGCTCATGGTGGACTTCGTGTCTT
TGGTGGTACATTCTTTGTATTCTCAGACTACGTCAAGGCGGCGGTACGCTTGTCAGCTCTGCAAGGATTGCCAGTGACCT
ACGTCTTTACCCACGACTCAGTCGCAGTTGGTGAAGATGGACCAACCCACGAACCAATCGAGCATTTGGCTGGTCTTCGT
GCAATGCCAAACCTCAACGTTTTCCGTCCAGCAGATGCGCGTGAAACACAAGCTGCTTGGTACTTGTCATTGACAAGCAA
GTCTACACCATCAGCCCTTGTCCTCACTCGTCAAAACTTGACAGTGGAAGAAGGAACAGACTTTGATAAGGTTGCCAAAG
GTGCCTATGTTGTCTACGATACAGAAGGCTTTGACACTATTTTGATTGCATCAGGTTCTGAAGTTAACTTGGCAGTCAAG
GCAGCCAAGGAATTGGCGGCAGCTGGTACAAAAGTCCGTGTCGTGTCAGTACCTTCGACAGAGCTCTTCGATGCTCAAGA
CGCAGCTTACAAGGAAGAAATCCTTCCAAACGCTATTCGCCGTCGTTTGGCTATCGAAATGGGTGCTACTCAGGGCTGGT
ACAAGTATGTCGGCCTTGACGGTAAGGTGCTTGGTATCGATACGTTTGGTGCATCCGCTCCAGCTCAAACCGTTATCGAC
AACTACGGCTTCACCGTTGAAAACGTCGTGAAATTGGTTAATGAGTTGTAA

Domains

Predicted by InterProScan.

Transketolase, C-terminal domain (Transketolase_C)

(536-649)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(3-332)

Transketolase, pyrimidine binding domain (Transket_pyr)

(352-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

80.03

100

0.8