Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   NQZ91_RS03020 Genome accession   NZ_CP102145
Coordinates   628560..629207 (-) Length   215 a.a.
NCBI ID   WP_125265611.1    Uniprot ID   -
Organism   Streptococcus suis strain DNS20     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 623560..634207
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ91_RS03010 (NQZ91_03010) - 625775..627100 (-) 1326 WP_257117831.1 FAD-containing oxidoreductase -
  NQZ91_RS03015 (NQZ91_03015) - 627209..628558 (-) 1350 WP_257117832.1 HAMP domain-containing sensor histidine kinase -
  NQZ91_RS03020 (NQZ91_03020) scnR 628560..629207 (-) 648 WP_125265611.1 response regulator transcription factor Regulator
  NQZ91_RS03025 (NQZ91_03025) - 629373..630071 (+) 699 WP_125265612.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  NQZ91_RS03030 (NQZ91_03030) - 630090..630899 (+) 810 WP_125265613.1 PrsW family glutamic-type intramembrane protease -
  NQZ91_RS03035 (NQZ91_03035) - 630975..631449 (-) 475 Protein_600 FAD-dependent oxidoreductase -
  NQZ91_RS03040 (NQZ91_03040) - 631560..632843 (-) 1284 WP_257117833.1 O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase family protein -
  NQZ91_RS03045 (NQZ91_03045) - 633006..633392 (-) 387 WP_125265615.1 hypothetical protein -
  NQZ91_RS03050 (NQZ91_03050) - 633798..634172 (+) 375 WP_257117834.1 hypothetical protein -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24518.56 Da        Isoelectric Point: 5.3564

>NTDB_id=615451 NQZ91_RS03020 WP_125265611.1 628560..629207(-) (scnR) [Streptococcus suis strain DNS20]
MARILVLEDDTVINQVVCEFLKEEGHEVLSFVNGRAAYQASQESRFDLLILDIMVPEMTGLEVLQKVRKTSDMPVLMLTA
LGDECTQLLSFNQQISDYVTKPFSPLILMKRVENILRQECQTDQLVVGTISLSEKTGMVYDQGKLVSLTQKEYGILHYLI
KHKGQIVSRDGMMLDIWGYTELDSRVLDNHIKNLRKKLPDLPLKTVIGRGYQLET

Nucleotide


Download         Length: 648 bp        

>NTDB_id=615451 NQZ91_RS03020 WP_125265611.1 628560..629207(-) (scnR) [Streptococcus suis strain DNS20]
ATGGCACGCATTTTGGTACTGGAAGACGACACTGTTATCAACCAGGTTGTCTGTGAATTTTTGAAGGAAGAGGGGCATGA
AGTCCTGAGTTTTGTCAATGGCAGAGCAGCTTATCAAGCTAGTCAGGAAAGCCGGTTTGACCTCCTTATTCTAGACATCA
TGGTCCCTGAGATGACCGGCTTGGAAGTCTTACAGAAAGTTCGGAAAACCTCCGATATGCCTGTGCTCATGCTGACAGCC
TTGGGGGACGAATGCACTCAGCTCCTGTCTTTTAATCAGCAGATTAGTGATTATGTCACCAAGCCCTTTTCTCCCCTTAT
CCTGATGAAACGGGTTGAGAATATTCTCCGTCAGGAATGTCAAACGGATCAACTGGTGGTTGGAACCATCAGCCTATCTG
AAAAAACAGGTATGGTTTATGACCAGGGCAAGCTAGTTTCCTTGACCCAGAAGGAGTATGGCATTCTACACTATCTGATC
AAGCACAAGGGCCAGATTGTCAGTCGAGACGGCATGATGTTGGATATCTGGGGCTATACAGAATTGGATAGTCGCGTTCT
TGACAACCACATCAAAAATCTGAGAAAGAAATTACCAGACCTTCCCCTAAAAACGGTCATTGGCCGTGGTTATCAGTTGG
AGACCTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(144-213)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

34.978

100

0.363