Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LIN99_RS02125 Genome accession   NZ_CP085093
Coordinates   418980..420038 (-) Length   352 a.a.
NCBI ID   WP_005544399.1    Uniprot ID   A0A5D0EHN3
Organism   Aggregatibacter actinomycetemcomitans strain 23S     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 413980..425038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIN99_RS02105 tal 414819..415772 (+) 954 WP_005571405.1 transaldolase -
  LIN99_RS02110 tkt 415905..417902 (+) 1998 WP_005568499.1 transketolase -
  LIN99_RS02115 - 417974..418363 (-) 390 WP_005568497.1 RidA family protein -
  LIN99_RS02120 recX 418440..418898 (-) 459 WP_005548507.1 recombination regulator RecX -
  LIN99_RS02125 recA 418980..420038 (-) 1059 WP_005544399.1 recombinase RecA Machinery gene
  LIN99_RS02130 - 420186..422109 (-) 1924 Protein_409 ABC transporter ATP-binding protein -
  LIN99_RS02135 - 422190..422807 (+) 618 WP_005568493.1 MarC family protein -
  LIN99_RS02140 - 422913..424340 (+) 1428 Protein_411 hypothetical protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37977.47 Da        Isoelectric Point: 4.8931

>NTDB_id=615450 LIN99_RS02125 WP_005544399.1 418980..420038(-) (recA) [Aggregatibacter actinomycetemcomitans strain 23S]
MATQEEKQKALDAALGQIEKQFGKGAIMKLGDSQKLDIEAISTGSFGLDLALGIGGLPMGRIVEIFGPESSGKTTLTLSV
IAEAQKTGKTCAFIDAEHALDPIYASKLGVDVKELLVSQPDNGEQALEICDALVRSGAVDVIIVDSVAALTPKAEIEGDM
GDSHMGLQARLMSQALRKLTSQIKNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRVGSIKEGDEVIG
NETRVKVVKNKVAPPFRQVDFQILYGEGISKESELIELGVKHKLISKAGAWYAYQNEKIGQGKTNAMKWLKDNPEQAKFI
ESTLRDELLAHPESAITAEVENEAGNGEGDFE

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=615450 LIN99_RS02125 WP_005544399.1 418980..420038(-) (recA) [Aggregatibacter actinomycetemcomitans strain 23S]
ATGGCAACTCAAGAAGAAAAGCAAAAAGCACTCGACGCGGCGTTAGGTCAAATTGAAAAACAATTTGGTAAAGGCGCCAT
CATGAAACTCGGCGACAGCCAAAAACTGGACATTGAAGCGATTTCCACCGGTTCTTTCGGTCTTGACCTAGCACTAGGCA
TCGGCGGTTTGCCGATGGGGCGTATCGTGGAGATTTTCGGGCCGGAATCTTCAGGTAAAACTACTTTAACCCTTTCTGTG
ATTGCGGAAGCGCAAAAAACCGGCAAAACCTGTGCCTTTATTGATGCGGAACATGCTTTAGACCCGATTTATGCCTCCAA
ACTCGGCGTGGATGTAAAAGAACTTTTAGTTTCCCAGCCGGACAACGGCGAACAGGCGCTGGAAATTTGTGATGCGTTGG
TGCGTTCCGGTGCGGTGGATGTAATTATCGTTGACTCCGTTGCCGCCTTAACGCCGAAAGCGGAAATTGAAGGCGACATG
GGCGATTCCCACATGGGATTACAAGCGCGTTTAATGTCTCAAGCATTGCGTAAACTTACCAGCCAAATTAAAAACGCCAA
CTGCTTGGTGATTTTCATCAACCAAATTCGGATGAAAATCGGCGTGATGTTCGGTAATCCGGAAACCACCACCGGCGGTA
ACGCGTTGAAATTCTATGCCTCCGTGCGTTTGGATATTCGCCGCGTGGGTTCTATCAAAGAGGGTGATGAAGTTATCGGT
AATGAAACTCGTGTGAAAGTGGTGAAAAACAAAGTGGCGCCACCGTTCCGCCAAGTGGATTTCCAAATTCTGTACGGCGA
AGGTATTTCCAAAGAAAGCGAACTGATTGAGCTCGGCGTGAAACATAAACTCATCAGCAAAGCAGGTGCGTGGTACGCTT
ACCAAAACGAGAAAATCGGTCAGGGCAAAACCAATGCTATGAAATGGTTGAAAGACAATCCTGAACAAGCCAAATTTATC
GAAAGCACCTTGCGTGATGAATTGTTGGCACATCCGGAATCTGCCATCACTGCGGAAGTAGAAAACGAAGCGGGTAATGG
CGAAGGCGATTTCGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5D0EHN3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Glaesserella parasuis strain SC1401

75

98.864

0.741
  recA Vibrio cholerae strain A1552

75.758

93.75

0.71
  recA Vibrio cholerae O1 biovar El Tor strain E7946

75.758

93.75

0.71
  recA Pseudomonas stutzeri DSM 10701

76.308

92.33

0.705
  recA Neisseria gonorrhoeae strain FA1090

73.292

91.477

0.67
  recA Neisseria gonorrhoeae MS11

73.292

91.477

0.67
  recA Neisseria gonorrhoeae MS11

73.292

91.477

0.67
  recA Acinetobacter baylyi ADP1

69.322

96.307

0.668
  recA Ralstonia pseudosolanacearum GMI1000

70.552

92.614

0.653
  recA Acinetobacter baumannii D1279779

70.769

92.33

0.653
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.264

94.602

0.608
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.615

92.33

0.597
  recA Helicobacter pylori 26695

62.575

94.886

0.594
  recA Helicobacter pylori strain NCTC11637

62.575

94.886

0.594
  recA Bacillus subtilis subsp. subtilis str. 168

63.354

91.477

0.58
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.856

92.898

0.565
  recA Streptococcus mutans UA159

60

92.33

0.554
  recA Streptococcus mitis NCTC 12261

60.185

92.045

0.554
  recA Streptococcus mitis SK321

60.185

92.045

0.554
  recA Streptococcus pneumoniae D39

59.327

92.898

0.551
  recA Streptococcus pneumoniae TIGR4

59.327

92.898

0.551
  recA Streptococcus pneumoniae Rx1

59.327

92.898

0.551
  recA Streptococcus pneumoniae R6

59.327

92.898

0.551
  recA Streptococcus pyogenes NZ131

58.769

92.33

0.543
  recA Latilactobacillus sakei subsp. sakei 23K

60.323

88.068

0.531
  recA Lactococcus lactis subsp. cremoris KW2

56.173

92.045

0.517