Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   NQZ91_RS02965 Genome accession   NZ_CP102145
Coordinates   612397..615669 (-) Length   1090 a.a.
NCBI ID   WP_257117826.1    Uniprot ID   -
Organism   Streptococcus suis strain DNS20     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 607397..620669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ91_RS02950 (NQZ91_02950) - 607991..608374 (-) 384 WP_172009602.1 PH domain-containing protein -
  NQZ91_RS02955 (NQZ91_02955) - 608496..608765 (-) 270 WP_257104361.1 nucleoside-diphosphate kinase -
  NQZ91_RS02960 (NQZ91_02960) rexA 608789..612400 (-) 3612 WP_257117825.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  NQZ91_RS02965 (NQZ91_02965) rexB 612397..615669 (-) 3273 WP_257117826.1 ATP-dependent nuclease subunit B Machinery gene
  NQZ91_RS02970 (NQZ91_02970) - 616237..616524 (-) 288 WP_170242492.1 DUF1905 domain-containing protein -
  NQZ91_RS02975 (NQZ91_02975) - 616533..617186 (-) 654 WP_029996906.1 DNA alkylation repair protein -
  NQZ91_RS02980 (NQZ91_02980) - 617176..617685 (-) 510 WP_170238486.1 GNAT family N-acetyltransferase -
  NQZ91_RS02985 (NQZ91_02985) - 617686..618303 (-) 618 WP_105108009.1 DUF5052 family protein -
  NQZ91_RS02990 (NQZ91_02990) - 618811..619587 (+) 777 WP_257117827.1 DUF6261 family protein -

Sequence

Protein


Download         Length: 1090 a.a.        Molecular weight: 124254.38 Da        Isoelectric Point: 6.5798

>NTDB_id=615450 NQZ91_RS02965 WP_257117826.1 612397..615669(-) (rexB) [Streptococcus suis strain DNS20]
MKLYYSDISNDITKKLTALALEESQRVQRVFYIAPNSLSFEKEKKVLSYLPRKASLSILVTRFAQMARYFIYHEENSKKA
LDDLGLSMIVYRVLAQFEDGDLQVYGRLKKDPAFIEQVVNLYKELQTSNMPISALENLETSAKQADIIKILSALQDVLMD
EDYENETKLAQFRRKVESGQLDDQLSQVVLIVDGFTRFSAEEEALIASLHGRVAEIHIASYASKKAYQATHLEGNVFQAS
VEFLRHLAFSYQTKPIFMDGVDQGKLTRNDGDVTRPSLAKLSKNIESQFDYSKPAYELTEEDLSAIEIWEATNQKEEVEA
VARSIRKRLFEGTRYKDILVLLGDVDSYQLQIGKIFDKYEIPHYFGRAEEMSHHPLVHFVESLERLKRYNFRAEDLINLL
KSGLYGQLEQGQLDRFHAYITFVDLKGQAKFSRDFTVNSRANYDLEVLNQLRESIMAPLTQFFKARPQSGQSLLEKFMEF
ARRINLAENMAALSEGLNQLQIEKEEEVWKAFCHILEVFQHLFAKETLSVEDFLSLLKAGMQSSHYRTVPATVDVVSVKS
YDLIEPHTAKYVYALGLSQSNFPKVAKNTGILTDEEKARMNERSDSLAQFHIPSRENGKKNHATFMSLLHSATEHLVLSA
PQLYNEGQELVSPYLKLLTDLGVKSIEKGRRKTLLPTDVGHFNGLLSQVIQLNPEELATEEDTDIKNFWSAAVRYLDKKL
RQKGVTIPTISSQLLSQKLAKKTLATLYPVDQPLRLSVSSLTDFYKNEYLFFIKHVLRLQEQDSIRPDARSHGNFLHRIF
ERVTMDHSSAFFDEKLEQAIAATRQEKDFQALYGENADSRYSEQILLDVARASSLVLRGDNPVQVLANEAVFGQNEQAHL
ELEGGRKLQIIGKIDRLDQLLSDQALGVVDYKSSANSFKIDRFYNGLSPQLITYLSAVSQMKDAGQTDKVFGAMYLHLLD
PIVKLADTKGQNQVLAEAYKSLVYKGLFIEEESNRLNQLYHKTKASLYSRKELGLLMAHNEKLYRQAASRILEGEFAINP
YTEDGRSVAGDQLKAITGFEADRHLSQARVLVKGGRREDWLERMKGGSQL

Nucleotide


Download         Length: 3273 bp        

>NTDB_id=615450 NQZ91_RS02965 WP_257117826.1 612397..615669(-) (rexB) [Streptococcus suis strain DNS20]
ATGAAGTTATATTATTCAGACATCAGCAATGATATTACCAAGAAGTTGACTGCTTTAGCACTGGAAGAGTCCCAGCGGGT
TCAACGGGTATTTTACATTGCGCCCAACTCCTTGTCCTTTGAAAAGGAAAAAAAGGTCCTATCCTACCTGCCGAGAAAGG
CTAGTTTATCAATCCTGGTGACCCGCTTTGCGCAAATGGCCCGTTATTTTATCTACCATGAAGAGAACAGCAAAAAAGCG
TTGGATGATTTGGGCTTGTCCATGATAGTCTATCGAGTATTAGCACAGTTTGAAGATGGTGATTTGCAGGTCTATGGCCG
CTTGAAGAAGGACCCGGCATTTATTGAGCAGGTGGTCAATCTTTACAAGGAATTGCAAACCTCCAACATGCCCATTTCTG
CCTTGGAAAATCTGGAGACTTCTGCCAAGCAGGCAGATATTATCAAGATTTTGTCAGCCTTGCAGGACGTTCTCATGGAC
GAGGATTATGAAAATGAGACCAAGTTGGCGCAATTCAGACGGAAAGTAGAGTCAGGTCAATTGGATGACCAGCTCAGCCA
GGTGGTCCTGATTGTGGACGGTTTTACGCGTTTTTCAGCTGAAGAGGAAGCCCTAATTGCCAGCCTTCATGGGCGTGTAG
CGGAAATACACATTGCCAGCTATGCCAGCAAAAAAGCCTACCAGGCAACTCATCTTGAGGGGAATGTTTTTCAAGCCAGT
GTTGAATTTCTCCGTCACTTGGCTTTTAGCTACCAGACCAAGCCCATTTTCATGGACGGAGTTGATCAAGGCAAGTTGAC
AAGGAATGATGGCGATGTTACGAGGCCATCCCTTGCAAAACTATCCAAAAATATTGAAAGCCAGTTTGATTATTCCAAAC
CTGCCTATGAGCTGACTGAAGAGGATTTGTCAGCCATTGAAATCTGGGAGGCTACCAATCAAAAGGAGGAGGTTGAAGCG
GTTGCTCGTTCCATTCGTAAAAGATTGTTTGAGGGGACTCGCTATAAGGATATCCTAGTCCTGCTAGGTGATGTGGATAG
CTACCAACTTCAGATTGGCAAGATTTTTGATAAATATGAAATCCCCCACTATTTTGGCAGGGCTGAGGAAATGAGCCACC
ATCCGCTGGTGCATTTTGTGGAGTCCCTGGAGCGTCTAAAACGCTATAATTTTCGGGCGGAGGACCTGATTAACTTGCTG
AAATCTGGTCTCTATGGCCAGTTGGAGCAGGGGCAACTGGACCGCTTCCACGCTTATATTACCTTTGTGGATCTCAAGGG
CCAGGCTAAGTTTTCTCGTGATTTTACGGTCAATAGCAGAGCGAATTATGATTTGGAGGTTTTGAACCAGCTACGAGAGA
GCATTATGGCACCTCTGACACAGTTTTTCAAGGCTCGTCCGCAGTCAGGCCAATCCCTTCTAGAAAAATTCATGGAGTTT
GCCCGTCGCATCAACTTGGCTGAAAATATGGCTGCCTTGTCAGAGGGACTGAACCAGCTGCAAATTGAAAAAGAGGAAGA
GGTTTGGAAGGCTTTCTGCCATATTCTGGAAGTTTTTCAACACTTGTTTGCCAAGGAAACCCTGTCGGTCGAGGATTTCC
TTTCCCTACTCAAGGCGGGTATGCAATCTAGTCATTACCGGACCGTCCCAGCAACGGTGGATGTAGTGTCTGTCAAGTCC
TATGATTTGATTGAACCGCATACGGCCAAGTATGTCTATGCCCTGGGGTTGAGCCAGTCGAATTTCCCAAAAGTTGCCAA
GAATACAGGTATTTTGACCGACGAGGAGAAGGCCAGGATGAATGAACGTTCGGACTCCCTAGCCCAGTTCCACATTCCTA
GTCGGGAAAATGGCAAGAAAAACCATGCAACCTTTATGTCCTTGCTGCATTCGGCGACTGAGCATCTGGTCTTATCAGCT
CCGCAATTGTACAATGAAGGTCAGGAATTAGTCTCTCCTTATCTGAAGCTATTGACGGACTTGGGTGTGAAATCCATTGA
AAAAGGTCGGAGGAAGACCCTGCTGCCAACGGATGTCGGGCATTTTAATGGTCTCCTGTCCCAAGTTATCCAGCTCAATC
CTGAGGAATTGGCTACAGAAGAGGATACTGATATCAAGAACTTTTGGTCGGCGGCTGTCCGTTATCTTGATAAGAAGTTA
AGGCAAAAGGGCGTTACCATTCCGACAATTTCCAGCCAATTGCTCAGTCAGAAGCTGGCCAAGAAAACTCTGGCGACCCT
CTATCCAGTTGACCAGCCTTTGAGGTTGTCGGTGTCTAGCTTGACGGACTTCTACAAGAATGAATACCTCTTTTTCATTA
AGCATGTCTTGCGTTTGCAGGAGCAGGATTCTATTCGACCGGATGCTCGTAGCCATGGGAATTTCCTCCATCGGATTTTT
GAGCGCGTGACCATGGACCACAGCAGTGCCTTCTTCGATGAAAAGTTGGAGCAGGCCATTGCAGCAACCCGTCAGGAAAA
GGATTTCCAGGCCCTATACGGTGAGAATGCCGATAGTCGTTATTCGGAGCAAATTTTGTTGGACGTAGCGCGTGCAAGTT
CCCTCGTTTTACGAGGCGATAATCCTGTGCAAGTCTTGGCCAATGAAGCAGTGTTTGGTCAGAACGAGCAAGCCCATTTA
GAACTAGAAGGTGGTCGTAAGCTACAAATTATCGGTAAGATTGACCGCCTGGATCAGCTGCTATCAGACCAGGCTTTGGG
TGTGGTTGACTACAAGTCCAGTGCCAATAGCTTTAAGATTGACAGATTTTACAATGGCCTTAGTCCCCAGCTCATTACCT
ATCTGTCGGCCGTTAGTCAGATGAAGGATGCTGGGCAGACAGATAAGGTATTTGGGGCCATGTATCTGCATTTGCTGGAT
CCCATTGTCAAATTGGCCGATACTAAGGGGCAGAACCAGGTACTTGCTGAAGCATACAAATCCTTGGTTTATAAGGGCTT
GTTTATCGAAGAGGAGAGCAATCGTCTCAACCAGCTCTATCATAAGACCAAGGCCAGTCTGTATAGTCGCAAGGAATTAG
GGCTTCTAATGGCCCATAATGAGAAATTGTACCGCCAGGCAGCCAGCCGCATTTTAGAGGGGGAATTTGCCATCAATCCC
TATACAGAAGATGGACGTTCCGTTGCAGGTGACCAGCTCAAGGCCATTACCGGATTTGAAGCAGACCGGCATCTGAGCCA
GGCTCGTGTCTTGGTCAAGGGTGGTAGGCGAGAAGACTGGTTAGAGCGAATGAAAGGAGGGAGCCAATTGTGA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(755-1042)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

44.959

100

0.454