Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   NQZ91_RS02090 Genome accession   NZ_CP102145
Coordinates   426779..428518 (-) Length   579 a.a.
NCBI ID   WP_257104463.1    Uniprot ID   -
Organism   Streptococcus suis strain DNS20     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 421779..433518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ91_RS02065 (NQZ91_02065) - 421972..422994 (-) 1023 WP_105160953.1 branched-chain amino acid aminotransferase -
  NQZ91_RS02070 (NQZ91_02070) trmD 423222..423950 (-) 729 WP_105123272.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  NQZ91_RS02075 (NQZ91_02075) rimM 423940..424458 (-) 519 WP_257117747.1 ribosome maturation factor RimM -
  NQZ91_RS02080 (NQZ91_02080) - 424681..424923 (-) 243 WP_257117748.1 hypothetical protein -
  NQZ91_RS02085 (NQZ91_02085) rcrQ 425000..426769 (-) 1770 WP_105111984.1 ABC transporter ATP-binding protein Regulator
  NQZ91_RS02090 (NQZ91_02090) rcrP 426779..428518 (-) 1740 WP_257104463.1 ABC transporter ATP-binding protein Regulator
  NQZ91_RS02095 (NQZ91_02095) - 428578..428820 (-) 243 WP_105111986.1 KH domain-containing protein -
  NQZ91_RS02100 (NQZ91_02100) rpsP 428842..429114 (-) 273 WP_105111987.1 30S ribosomal protein S16 -
  NQZ91_RS02105 (NQZ91_02105) - 429251..429547 (-) 297 WP_257104462.1 DUF4298 domain-containing protein -
  NQZ91_RS02110 (NQZ91_02110) pcp 429559..430206 (-) 648 WP_105123268.1 pyroglutamyl-peptidase I -
  NQZ91_RS02115 (NQZ91_02115) - 430214..430969 (-) 756 WP_257117749.1 class I SAM-dependent methyltransferase -
  NQZ91_RS02120 (NQZ91_02120) - 431118..432113 (-) 996 WP_257117750.1 YhdH/YhfP family quinone oxidoreductase -
  NQZ91_RS02125 (NQZ91_02125) - 432438..432776 (-) 339 WP_105111991.1 ATP cone domain-containing protein -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 65501.94 Da        Isoelectric Point: 4.9692

>NTDB_id=615443 NQZ91_RS02090 WP_257104463.1 426779..428518(-) (rcrP) [Streptococcus suis strain DNS20]
MKLIWNYLKHYPKWLILDLFAGILFVAVNLGLPTFLARMIDQGLTQNNPAQVYFWAWMMLIIVVLGIVGRVLLAYAAGQL
TTNIVKDIRNDLYEKIQDYSHHEYEQIGVSSLVTRITNDAFVLMQFAEQVLRLGVITPMMMIASVIMTLVTSPGLAWTVA
VAMPFLVWVVYYVAIKTRPLSEMQQQKLDTINQYVRENLMGLRVIRAFAREEFQEERFEQVNEDYTGISKKLFILTGLTE
PLFVQIIIAMIVAIVWFALAPLREGSLQIGDLVAFIEYGFHALFSFLLFANLFTMYPRTAVSAKRIQEVLDMPISISKNE
DGIIETETRGYLEFDNVTFAYPGETESPVLHNISFKAEPGQTIAFIGSTGSGKSTLVQLIPRFFDVTLGRILVDGVDVRR
YNLKTLRSKIGFIPQKALLFTGTIAENLKYGKLDASMTELDAAADVAQAKDFIESKEERFETHLAEGGSNLSGGQKQRLS
IARAIVKEPEIYIFDDSFSALDYRTDAILRKRLKEVTENATVLIVAQRVGTIMDADQIIVLNEGEIVGRGKHDELMESNE
FYREIANSQLNRQSLTEEE

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=615443 NQZ91_RS02090 WP_257104463.1 426779..428518(-) (rcrP) [Streptococcus suis strain DNS20]
ATGAAACTTATTTGGAACTATCTGAAACACTATCCAAAATGGTTGATATTAGACCTGTTTGCCGGAATTTTGTTCGTAGC
GGTCAACCTTGGTTTGCCAACCTTCTTGGCTCGGATGATTGACCAGGGGCTCACGCAAAATAATCCTGCCCAAGTCTATT
TTTGGGCTTGGATGATGTTGATAATCGTTGTGTTGGGCATTGTCGGTCGTGTCCTTTTGGCCTATGCTGCTGGACAGTTG
ACGACCAATATTGTCAAGGATATCCGCAATGATTTGTATGAAAAAATCCAAGATTATTCCCATCATGAATACGAGCAGAT
TGGTGTTTCTTCTCTTGTAACACGGATTACCAATGATGCCTTTGTCCTCATGCAGTTTGCGGAGCAGGTTCTGCGACTGG
GTGTTATCACGCCTATGATGATGATTGCCTCGGTCATCATGACCCTGGTGACCAGTCCTGGACTGGCTTGGACAGTAGCA
GTGGCTATGCCTTTCTTGGTCTGGGTCGTCTATTATGTGGCCATCAAGACCCGTCCTTTGTCTGAAATGCAGCAGCAAAA
GTTGGACACGATTAACCAGTACGTCCGTGAAAATCTCATGGGGTTGCGGGTCATCCGGGCTTTTGCGCGCGAAGAATTTC
AAGAAGAACGATTTGAGCAGGTCAATGAGGATTACACCGGCATTTCTAAGAAACTCTTCATCTTGACAGGTTTGACGGAG
CCACTATTTGTACAAATCATTATTGCCATGATTGTGGCCATTGTCTGGTTTGCCCTTGCTCCGCTCAGAGAAGGTAGCTT
GCAAATCGGTGACCTGGTTGCCTTTATTGAGTATGGTTTTCATGCCCTTTTCTCCTTCTTGCTCTTTGCCAATCTCTTTA
CCATGTATCCCCGGACGGCAGTTTCAGCCAAGCGGATTCAGGAAGTTCTGGACATGCCGATTTCAATTTCTAAAAATGAA
GACGGGATTATAGAGACAGAAACCCGCGGTTACCTGGAATTTGACAATGTGACCTTTGCCTATCCAGGTGAGACCGAGTC
GCCTGTTCTCCACAATATCTCCTTTAAGGCAGAACCTGGTCAGACCATTGCCTTTATTGGCTCAACGGGTTCTGGTAAGT
CTACTCTGGTCCAGCTCATTCCGCGATTTTTCGATGTGACCCTGGGCCGGATCTTGGTAGATGGTGTGGATGTCAGACGC
TACAATCTGAAAACCCTCCGCAGCAAGATTGGCTTTATTCCGCAGAAAGCTCTGCTATTTACCGGAACAATCGCCGAAAA
CCTCAAGTATGGAAAGCTGGATGCCAGCATGACGGAGCTGGATGCGGCGGCTGATGTGGCTCAGGCCAAGGATTTTATCG
AAAGCAAGGAAGAACGGTTTGAGACCCATTTGGCAGAAGGCGGTAGCAATCTGTCTGGCGGGCAAAAACAGCGACTGTCT
ATCGCGCGTGCCATTGTCAAGGAACCAGAAATCTATATCTTTGATGATTCCTTCTCTGCCTTAGACTATCGGACAGATGC
GATTTTACGCAAGCGCCTCAAGGAAGTGACGGAAAATGCGACTGTCCTTATCGTTGCCCAGCGTGTGGGAACCATTATGG
ATGCAGACCAGATTATTGTCCTCAACGAAGGGGAAATTGTCGGTCGTGGTAAGCACGATGAGTTAATGGAAAGCAATGAA
TTCTACCGTGAAATTGCCAATTCTCAACTCAATCGTCAGTCCTTGACAGAAGAAGAATAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(350-497)

ABC transporter transmembrane region (ABC_membrane)

(16-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.36

91.71

0.361