Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   NQZ91_RS02085 Genome accession   NZ_CP102145
Coordinates   425000..426769 (-) Length   589 a.a.
NCBI ID   WP_105111984.1    Uniprot ID   -
Organism   Streptococcus suis strain DNS20     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 420000..431769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ91_RS02050 (NQZ91_02050) relB 420233..420448 (-) 216 WP_172067487.1 type II toxin-antitoxin system RelB family antitoxin -
  NQZ91_RS02055 (NQZ91_02055) - 420641..420778 (-) 138 WP_257104465.1 hypothetical protein -
  NQZ91_RS02060 (NQZ91_02060) - 420818..421766 (-) 949 Protein_407 IS30 family transposase -
  NQZ91_RS02065 (NQZ91_02065) - 421972..422994 (-) 1023 WP_105160953.1 branched-chain amino acid aminotransferase -
  NQZ91_RS02070 (NQZ91_02070) trmD 423222..423950 (-) 729 WP_105123272.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  NQZ91_RS02075 (NQZ91_02075) rimM 423940..424458 (-) 519 WP_257117747.1 ribosome maturation factor RimM -
  NQZ91_RS02080 (NQZ91_02080) - 424681..424923 (-) 243 WP_257117748.1 hypothetical protein -
  NQZ91_RS02085 (NQZ91_02085) rcrQ 425000..426769 (-) 1770 WP_105111984.1 ABC transporter ATP-binding protein Regulator
  NQZ91_RS02090 (NQZ91_02090) rcrP 426779..428518 (-) 1740 WP_257104463.1 ABC transporter ATP-binding protein Regulator
  NQZ91_RS02095 (NQZ91_02095) - 428578..428820 (-) 243 WP_105111986.1 KH domain-containing protein -
  NQZ91_RS02100 (NQZ91_02100) rpsP 428842..429114 (-) 273 WP_105111987.1 30S ribosomal protein S16 -
  NQZ91_RS02105 (NQZ91_02105) - 429251..429547 (-) 297 WP_257104462.1 DUF4298 domain-containing protein -
  NQZ91_RS02110 (NQZ91_02110) pcp 429559..430206 (-) 648 WP_105123268.1 pyroglutamyl-peptidase I -
  NQZ91_RS02115 (NQZ91_02115) - 430214..430969 (-) 756 WP_257117749.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 66057.20 Da        Isoelectric Point: 5.7850

>NTDB_id=615442 NQZ91_RS02085 WP_105111984.1 425000..426769(-) (rcrQ) [Streptococcus suis strain DNS20]
MKNTNVFKRVWTYLRTYKSSIFIAILMKILSAIMNTLEPLVLGMVITELTANLLDMAKGVEGAGINVPYVATLLAIYAFR
ALMYEVGAYFSNYFMTKGVQHAVRDMRQDLSQKINRIPVSYFDKEQYGDLLGRFTNDVETVSNALQQSFLQIVNAALILT
FAIGMTFYLNVSLALVVLLLVPLTYFSSSYIIKRSQPYFKEQAAILGRLNGFIQENLTGFHVLKLYGREEQSKLEFRQIT
TDLQEVGFKASFTSGMMMPVVQGLSNLTYVIIALLAGLQVLAGRLTVGNLQAFVQYVFQISQPVQTLTQLAPQLQSAKSS
LERIFSVLDEVDEVNANEQALTDNLTGQVSFENVEFGYSEDKPLIRNFNLEVKPGEMVAIVGPTGAGKTTLINLLMRFYD
VTSGAIKVDGHDIRQLSRQSYRSQFGMVLQDAWLYEGTIKENLRFGRLDATDEEIVEAAKIANVDHFIRTLPGGYNMEMN
QESSNISQGQKQLLTIARALLADPSILILDEATSSVDTRLELLIQKAMKRLMQGRTSFVIAHRLSTIQEADKILVLKDGQ
IIEQGNHESLLAQEGFYYNLYQSQFSSSQ

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=615442 NQZ91_RS02085 WP_105111984.1 425000..426769(-) (rcrQ) [Streptococcus suis strain DNS20]
ATGAAGAATACAAATGTTTTTAAGCGTGTTTGGACCTATTTGCGGACCTACAAAAGCTCTATCTTTATTGCCATCCTTAT
GAAGATTCTCAGTGCCATTATGAATACCTTAGAGCCCCTGGTGCTGGGTATGGTTATCACCGAGCTGACAGCAAACTTAT
TGGATATGGCCAAGGGTGTTGAAGGAGCCGGTATCAACGTGCCTTATGTCGCAACCCTTCTAGCAATTTACGCCTTCCGT
GCCCTCATGTACGAAGTTGGAGCTTATTTTTCTAACTATTTCATGACCAAGGGTGTTCAACATGCTGTCCGTGATATGCG
CCAGGACTTGAGCCAAAAAATCAATCGAATCCCGGTTTCCTATTTTGACAAGGAGCAGTATGGTGACCTCCTGGGCCGCT
TTACCAATGACGTTGAGACAGTTTCCAATGCCCTACAGCAGAGTTTCCTGCAAATTGTCAATGCGGCCTTGATTTTGACC
TTTGCGATCGGCATGACCTTCTACCTCAATGTTTCCCTGGCCTTGGTCGTTCTGCTCTTGGTACCCCTGACTTACTTTAG
TTCTAGCTATATCATCAAGCGCTCCCAGCCTTATTTCAAGGAACAGGCCGCTATCCTGGGTCGCCTCAATGGCTTTATCC
AGGAAAATCTGACCGGTTTCCATGTTTTGAAACTCTACGGACGGGAAGAGCAGTCTAAACTTGAATTTCGCCAAATTACG
ACGGACCTGCAGGAGGTTGGTTTCAAGGCTAGCTTTACCTCTGGCATGATGATGCCGGTGGTTCAGGGCTTGTCAAACCT
GACCTATGTTATCATTGCCCTCTTGGCTGGTCTCCAGGTTTTGGCGGGGCGTCTGACAGTTGGTAATTTGCAGGCCTTCG
TCCAATACGTCTTCCAAATTTCTCAGCCGGTGCAAACCCTTACCCAGCTAGCTCCCCAGTTGCAGTCTGCTAAATCTTCC
CTGGAGCGCATTTTTTCAGTCCTAGATGAGGTGGATGAGGTCAACGCCAATGAGCAAGCCTTGACAGACAATCTGACCGG
CCAAGTCAGCTTTGAAAATGTTGAATTTGGCTATTCTGAGGATAAGCCTCTCATTCGCAATTTCAATCTGGAAGTCAAGC
CAGGTGAAATGGTAGCCATCGTTGGACCAACGGGTGCCGGAAAAACTACACTCATTAACCTGCTGATGCGATTTTACGAT
GTAACATCTGGAGCCATTAAGGTAGACGGTCACGATATTCGTCAATTATCACGCCAGTCCTACCGTAGTCAATTTGGTAT
GGTTCTGCAGGATGCATGGCTTTATGAAGGAACTATCAAGGAAAACCTTCGTTTTGGTCGGCTGGATGCCACTGATGAGG
AAATTGTTGAGGCAGCCAAGATTGCCAATGTGGACCACTTTATCCGTACCCTACCTGGCGGTTACAATATGGAGATGAAC
CAGGAATCCAGCAATATTTCGCAGGGGCAAAAACAGCTATTGACCATTGCGCGTGCATTGCTAGCTGATCCCTCCATTCT
CATTCTTGATGAGGCGACCTCATCCGTTGATACCCGCTTGGAATTGCTGATTCAGAAGGCTATGAAACGGCTCATGCAGG
GCAGAACCAGCTTTGTCATCGCCCATCGTCTGTCAACCATTCAAGAGGCGGATAAGATTCTGGTCCTCAAAGACGGCCAA
ATCATTGAACAGGGCAATCATGAAAGTCTGCTAGCCCAGGAAGGATTCTACTATAATCTCTATCAAAGCCAGTTTAGCAG
CAGTCAGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(366-514)

ABC transporter transmembrane region (ABC_membrane)

(21-304)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

42.542

100

0.426