Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   NQZ91_RS00440 Genome accession   NZ_CP102145
Coordinates   85959..88169 (+) Length   736 a.a.
NCBI ID   WP_257117593.1    Uniprot ID   -
Organism   Streptococcus suis strain DNS20     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 80959..93169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ91_RS00420 (NQZ91_00420) - 82284..83057 (+) 774 WP_257117589.1 class I SAM-dependent methyltransferase -
  NQZ91_RS00425 (NQZ91_00425) - 83150..83551 (+) 402 WP_257117590.1 DUF4825 domain-containing protein -
  NQZ91_RS00430 (NQZ91_00430) - 83564..84161 (-) 598 Protein_83 IS3 family transposase -
  NQZ91_RS00435 (NQZ91_00435) cls 84334..85881 (+) 1548 WP_257117591.1 cardiolipin synthase -
  NQZ91_RS00440 (NQZ91_00440) recJ 85959..88169 (+) 2211 WP_257117593.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  NQZ91_RS00445 (NQZ91_00445) - 88154..88729 (+) 576 WP_257117594.1 DUF3114 domain-containing protein -
  NQZ91_RS00450 (NQZ91_00450) - 88738..89994 (-) 1257 WP_257117459.1 ISL3 family transposase -
  NQZ91_RS00455 (NQZ91_00455) - 90086..90574 (+) 489 WP_257117595.1 DUF3114 domain-containing protein -
  NQZ91_RS00460 (NQZ91_00460) - 90601..91113 (+) 513 WP_257104618.1 adenine phosphoribosyltransferase -
  NQZ91_RS00465 (NQZ91_00465) metA 91226..92167 (+) 942 WP_257117596.1 homoserine O-succinyltransferase -
  NQZ91_RS00470 (NQZ91_00470) - 92177..92857 (+) 681 WP_257117597.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 736 a.a.        Molecular weight: 82154.66 Da        Isoelectric Point: 4.4161

>NTDB_id=615432 NQZ91_RS00440 WP_257117593.1 85959..88169(+) (recJ) [Streptococcus suis strain DNS20]
MIKPQYDWQLMPSFSDETFVKLAKKEGLDPIAAKLLYERGIQTAEDLQKFLQPSLEDLHDPYLLHDMDKAVERIRRAIED
YEQILIYGDYDADGMTSASILKETLEELGAEVQVYLPNRFTDGYGPNQSVYKYFIEQQGISLIVTVDNGVAGHEAIAYAQ
EMGVDVIVTDHHSLQATLPAAYAIVHPEHPEGNYPFKHLAGCGVAFKLACALLETVHADLLDLVAIGTIADMVSLTDENR
VMVKYGLSLLKQTERAGLQELMKIAGIELDGLDEETVGFQIAPRLNALGRLDDPNPALELLTGFDDEEAHEIALMIDAKN
VERKDIVQAIYDEAKTMLDTSRPVQVLAKEGWNPGVLGIVAGRLLEELGQLVIVLSIEEGRAKGSARSPEAVDIFQALKD
HQDLFIAFGGHAGAAGMTLEVDKLDQLADTLATFIEENKLDLSQKSALVIDEEIDLEELTLDTLKSFDKLAPYGMDNKKP
VFYVKDFQVESARTMGQNNAHLKLRISKGAAGFDVVAFGKGNLALEFSQAKDLELAVTLSVNKWNGNTSLQLMLVDARVD
GVQLYNIRSKQHPIPAGIPLVDMAEQTSSPVIALASLPEDLESLRSYFQEHQFEAIYFKNEIAKPYYLDGYGSREQFAKL
YKTIYQFDEFDVRYKLKDLAAYLKIKDSLLVKMIQIFQELEFVTISDGVMRVNKDAQKREISDSQIYQDLKKTVVQQELF
ALGTVQEIYDWLCGSS

Nucleotide


Download         Length: 2211 bp        

>NTDB_id=615432 NQZ91_RS00440 WP_257117593.1 85959..88169(+) (recJ) [Streptococcus suis strain DNS20]
GTGATTAAACCACAATATGACTGGCAATTGATGCCCAGTTTTTCTGATGAAACATTTGTCAAATTGGCAAAGAAAGAAGG
GTTGGACCCTATCGCAGCCAAGCTCCTCTACGAGCGGGGCATCCAGACAGCGGAGGATTTGCAGAAATTTTTGCAGCCCA
GCCTTGAAGACCTGCATGATCCTTATCTACTGCATGACATGGACAAGGCCGTTGAGCGGATTCGTCGGGCCATTGAGGAC
TACGAGCAGATTCTGATCTATGGTGATTACGATGCGGACGGCATGACATCAGCTTCGATTTTGAAGGAGACCTTGGAGGA
GCTAGGGGCGGAGGTCCAGGTCTACCTGCCCAACCGCTTTACCGATGGCTACGGCCCCAACCAGTCTGTCTACAAGTATT
TCATTGAGCAGCAGGGGATTTCTCTCATTGTTACGGTTGACAATGGCGTAGCGGGTCATGAAGCTATTGCCTATGCCCAA
GAGATGGGTGTTGATGTGATTGTGACGGACCACCATTCCCTTCAGGCGACTTTACCGGCTGCTTATGCCATTGTTCATCC
AGAGCATCCCGAAGGCAACTATCCCTTTAAGCACCTGGCTGGCTGTGGCGTCGCCTTCAAATTGGCATGCGCACTTTTGG
AGACGGTTCATGCAGACCTATTGGACCTAGTCGCAATTGGAACCATAGCCGATATGGTCAGCCTGACCGATGAAAATAGG
GTTATGGTCAAATACGGCCTTTCTCTGCTCAAACAAACTGAGCGGGCTGGCCTACAAGAATTGATGAAGATTGCTGGGAT
TGAGCTCGATGGCCTTGATGAAGAAACGGTCGGTTTTCAAATTGCCCCCCGCCTCAATGCCCTGGGCCGCCTGGATGACC
CCAATCCAGCCCTTGAACTCTTGACTGGCTTTGACGATGAAGAGGCCCATGAAATTGCCCTCATGATTGATGCTAAAAAT
GTGGAACGCAAGGATATTGTCCAGGCTATTTATGATGAGGCCAAGACCATGCTAGATACCAGTCGGCCTGTACAGGTTCT
AGCCAAGGAAGGCTGGAATCCTGGTGTGCTGGGGATCGTTGCAGGCCGTCTCTTGGAAGAGCTGGGCCAGCTGGTCATTG
TCCTGTCCATTGAGGAAGGGCGGGCCAAGGGCTCTGCCCGGTCACCGGAGGCTGTTGATATTTTCCAAGCCCTCAAGGAC
CACCAGGACCTCTTTATCGCCTTTGGCGGTCACGCTGGAGCTGCTGGCATGACGCTGGAAGTGGATAAATTAGACCAGCT
GGCGGACACTTTAGCGACCTTTATCGAAGAGAATAAACTGGACTTGTCTCAGAAATCTGCACTGGTTATTGATGAGGAGA
TTGACCTAGAGGAATTGACCCTGGATACTTTAAAATCCTTTGACAAGCTGGCTCCCTACGGCATGGACAACAAAAAACCG
GTCTTTTATGTCAAGGATTTTCAGGTTGAGTCTGCCCGGACTATGGGGCAAAACAATGCCCACCTCAAGCTACGGATCAG
TAAGGGAGCAGCCGGATTTGACGTCGTTGCCTTTGGCAAGGGCAATCTGGCTCTGGAATTTTCTCAGGCCAAGGATCTGG
AGCTAGCTGTGACCCTTTCTGTCAACAAATGGAATGGCAATACCAGCCTGCAGCTCATGCTGGTGGACGCGCGTGTGGAC
GGTGTTCAGCTCTATAACATTCGCAGTAAACAGCATCCGATTCCTGCTGGCATTCCTCTGGTGGACATGGCAGAGCAGAC
GAGTTCGCCTGTCATTGCTCTAGCTAGTTTGCCAGAGGATTTAGAAAGTCTGCGCAGCTATTTCCAAGAACATCAATTCG
AGGCTATCTACTTCAAAAATGAGATAGCCAAGCCATATTATTTGGATGGATACGGGAGTCGGGAGCAATTTGCCAAGCTC
TATAAGACCATTTACCAGTTTGATGAGTTTGATGTGCGTTATAAACTCAAGGATTTGGCTGCTTATCTGAAAATTAAGGA
TAGCTTGCTGGTCAAGATGATTCAGATTTTCCAGGAATTGGAGTTTGTCACCATTTCAGATGGGGTGATGAGGGTTAATA
AGGATGCCCAGAAGCGGGAGATTTCGGACAGTCAGATTTACCAAGACCTGAAGAAAACGGTCGTCCAGCAGGAGCTTTTT
GCCCTGGGAACGGTCCAAGAAATTTATGATTGGCTGTGTGGTTCATCATGA

Domains

Predicted by InterProScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(586-732)

DHH family (DHH)

(83-228)

DHHA1 domain (DHHA1)

(317-435)

RecJ OB domain (RecJ_OB)

(450-556)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

71.603

100

0.716
  recJ Bacillus subtilis subsp. subtilis str. 168

36.632

100

0.387