Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LIN94_RS01675 Genome accession   NZ_CP085092
Coordinates   327349..328053 (+) Length   234 a.a.
NCBI ID   WP_025298122.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain 30R     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 322349..333053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIN94_RS01655 - 322670..323788 (-) 1119 WP_005548211.1 TniQ family protein -
  LIN94_RS01660 - 323746..324639 (-) 894 WP_005541478.1 TniB family NTP-binding protein -
  LIN94_RS01665 - 324639..326558 (-) 1920 WP_025298121.1 Mu transposase C-terminal domain-containing protein -
  LIN94_RS01670 - 326551..327213 (-) 663 WP_005559213.1 heteromeric transposase endonuclease subunit TnsA -
  LIN94_RS01675 comM 327349..328053 (+) 705 WP_025298122.1 ATP-binding protein Machinery gene
  LIN94_RS01680 - 328065..328892 (-) 828 WP_005542516.1 divergent polysaccharide deacetylase family protein -
  LIN94_RS01685 envC 328889..330148 (-) 1260 WP_025298123.1 murein hydrolase activator EnvC -
  LIN94_RS01690 - 330357..332015 (-) 1659 WP_005571009.1 phospho-sugar mutase -
  LIN94_RS01695 - 332321..333004 (+) 684 WP_005567036.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26208.09 Da        Isoelectric Point: 9.8867

>NTDB_id=615424 LIN94_RS01675 WP_025298122.1 327349..328053(+) (comM) [Aggregatibacter actinomycetemcomitans strain 30R]
MPLICNFDSGTIPKPGEISLAHNGILFLDELPEFERKVLDALRQPLESGEIIISRANAKIQFPAKFQLIAAMNPSPTGHY
QGTHNRTSPQQVMRYLNRLSGPFLDRFDLSIEVPLLPQGSLQNSGDRGESSATVREKVLKTRAIQLQRAGKINAHLNSKE
IERDCKLTDKDAQFLENALTKLGLSVRAYHRILKVPRTIADLDGEQHINQRHLAEALGYRAMDRLLQKLAKNSA

Nucleotide


Download         Length: 705 bp        

>NTDB_id=615424 LIN94_RS01675 WP_025298122.1 327349..328053(+) (comM) [Aggregatibacter actinomycetemcomitans strain 30R]
ATGCCACTTATTTGTAACTTTGACAGCGGCACGATCCCCAAACCGGGCGAAATTTCCCTCGCTCACAATGGCATTCTTTT
CTTAGATGAGTTGCCCGAATTTGAACGCAAAGTGCTGGACGCGCTGCGTCAACCATTGGAAAGTGGCGAAATTATTATTT
CCCGCGCCAACGCCAAGATTCAATTTCCGGCAAAATTTCAACTGATTGCCGCGATGAATCCCAGCCCGACAGGGCATTAT
CAAGGCACGCATAATCGCACCTCACCACAACAAGTTATGCGTTATCTGAATCGGTTATCCGGCCCTTTTTTAGATCGCTT
CGATTTATCCATTGAAGTGCCCTTATTACCACAAGGCAGCTTACAAAATAGCGGCGATCGTGGCGAATCCAGCGCAACGG
TGCGAGAAAAAGTCCTGAAAACCCGTGCCATTCAACTTCAGCGCGCCGGCAAAATTAATGCCCATTTAAATAGCAAAGAA
ATCGAACGGGACTGCAAACTAACCGACAAAGACGCACAGTTCCTGGAAAATGCCCTGACTAAACTGGGGCTTTCCGTACG
AGCGTACCACCGCATACTGAAAGTGCCCCGCACCATTGCCGATTTAGATGGAGAACAACACATCAACCAGCGCCATCTGG
CCGAAGCTCTGGGTTATCGGGCAATGGACAGGTTGTTGCAAAAATTGGCGAAAAACTCGGCGTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(128-220)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(9-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

86.087

98.291

0.846
  comM Glaesserella parasuis strain SC1401

80.172

99.145

0.795
  comM Vibrio cholerae strain A1552

67.873

94.444

0.641
  comM Vibrio campbellii strain DS40M4

65.909

94.017

0.62
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

51.111

96.154

0.491
  comM Legionella pneumophila str. Paris

50.935

91.453

0.466
  comM Legionella pneumophila strain ERS1305867

50.935

91.453

0.466