Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   LIN93_RS06815 Genome accession   NZ_CP085091
Coordinates   1340453..1342882 (-) Length   809 a.a.
NCBI ID   WP_025298360.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain 30S     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1335453..1347882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIN93_RS06795 kdsB 1336689..1337462 (-) 774 WP_249852866.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LIN93_RS06800 - 1337464..1337643 (-) 180 WP_005567179.1 Trm112 family protein -
  LIN93_RS06805 lpxK 1337665..1338639 (-) 975 WP_005567180.1 tetraacyldisaccharide 4'-kinase -
  LIN93_RS06810 msbA 1338658..1340406 (-) 1749 WP_005567181.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  LIN93_RS06815 rec2 1340453..1342882 (-) 2430 WP_025298360.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LIN93_RS06820 dksA 1343180..1343617 (+) 438 WP_005556693.1 RNA polymerase-binding protein DksA -
  LIN93_RS06825 pcnB 1343734..1345200 (+) 1467 WP_050846365.1 polynucleotide adenylyltransferase PcnB -
  LIN93_RS06830 folK 1345193..1345693 (+) 501 WP_005586666.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  LIN93_RS06835 - 1345764..1345910 (-) 147 WP_005567188.1 hypothetical protein -
  LIN93_RS10460 - 1345991..1346125 (-) 135 WP_005567190.1 hypothetical protein -

Sequence

Protein


Download         Length: 809 a.a.        Molecular weight: 92164.96 Da        Isoelectric Point: 9.8478

>NTDB_id=615411 LIN93_RS06815 WP_025298360.1 1340453..1342882(-) (rec2) [Aggregatibacter actinomycetemcomitans strain 30S]
MSVSLDKLAIALIFSGLTLLFLPDRFLLSWQTACYLLLLLCPLMLLAYALRQDKIKQIVMWLLILMIQSAYVHQSAISIL
TQADNLANLPKTVHREFTVKEILHQQHYQTLVIRAKLAENLPEQRIYAQWKLKQPVNPGERYAGNLRLRALSSRLNFDGF
DRQPWYFGKHITAWAEIKSAVKLENVFSLRQTALNQALQQTENLPRQGLLLALGFGERFRLDQKTWQIYQKTNTAHLIAI
SGLHIGLAMMLGFTLARLLQFALPTRYISPTFPILCGFIFALLYSQLAGLAIPTLRAMIALAMLYAIQYWRRYWTVWQFL
LRVVALLIFIDPLMLLSTSFWLSVGAVTCLIVWYQYFPLSLLQWRGHSLANSPWRKVRYVFGLFHLQFGLLWLFTPIQLL
FFNGISLNSFIANVIAVPPYSFVLVPLMLFAVVTQGAWHSWQLANDLAEKITALLTPWQDDWLAISIPHSLWITLCLTFL
FLVALYVIYKPPKPITSTLALSRQHRFKGFHFNPERALSLPLRKSAYCVGGGLIALCCLTLISQSISRPNWQLETLDVGQ
GLATLIVKDGKGVLYDTGPSWKGGSMAQLEILPYLQRQGIDLEWLILSHDDNDHAGGAKDILAMYPHIQLTTASQKRYGS
QNTEKNDRTFCQAGKQWHWQGLHFTVLSPENIVPRAENRDSCTLLLTDGTHHILLTGDADLSVEYKILPKLGKIHVLQVG
HHGSKTSTGQALVQHIQPDIALISSGRWNPWHFPHKDVVARLQQQGSQIYNTAHSGQISLLFYNEEIKIQTARAEFSPWY
RRLIGLSTK

Nucleotide


Download         Length: 2430 bp        

>NTDB_id=615411 LIN93_RS06815 WP_025298360.1 1340453..1342882(-) (rec2) [Aggregatibacter actinomycetemcomitans strain 30S]
GTGAGCGTTTCGTTGGATAAGTTGGCTATAGCCCTGATTTTTAGCGGTTTAACATTATTGTTTTTGCCCGATCGCTTTTT
ATTATCGTGGCAAACGGCGTGCTATTTACTCCTCTTATTATGTCCACTCATGTTGCTTGCTTATGCCCTGCGACAGGACA
AAATCAAGCAAATAGTAATGTGGCTACTGATCTTGATGATTCAGTCCGCTTACGTCCACCAATCGGCAATTTCCATACTG
ACCCAGGCGGATAATCTTGCCAATCTGCCGAAAACCGTTCACCGCGAATTTACCGTCAAGGAAATTCTGCATCAGCAGCA
TTATCAAACCCTGGTTATTCGCGCCAAACTCGCCGAAAATCTTCCCGAACAACGTATTTACGCGCAATGGAAACTCAAGC
AACCAGTCAACCCCGGCGAACGTTACGCAGGCAATTTACGCTTGCGAGCGCTTTCTTCCCGCCTGAATTTTGACGGTTTT
GACCGCCAGCCATGGTATTTCGGCAAGCACATCACCGCTTGGGCAGAGATTAAAAGTGCGGTCAAATTGGAAAACGTTTT
TTCGTTACGCCAAACCGCTCTCAATCAAGCCTTACAACAAACGGAGAATTTACCCCGACAAGGCTTGTTGCTGGCACTCG
GTTTTGGCGAACGTTTCCGCTTAGACCAAAAAACTTGGCAAATTTATCAAAAAACAAATACGGCGCATTTAATTGCCATT
TCAGGGCTGCATATCGGACTGGCGATGATGCTGGGTTTTACCTTGGCGCGTCTACTGCAATTTGCCTTGCCGACGCGTTA
CATCAGCCCGACATTTCCGATTCTGTGCGGATTCATTTTTGCGTTGTTATACAGCCAACTGGCGGGGCTTGCTATTCCGA
CTTTACGCGCTATGATTGCGTTAGCCATGCTCTACGCGATTCAGTATTGGCGACGATATTGGACGGTATGGCAATTCTTG
TTAAGAGTGGTTGCCTTGCTGATTTTTATCGATCCGCTCATGTTACTTTCCACCAGCTTTTGGTTGTCGGTGGGCGCAGT
GACCTGTCTGATTGTTTGGTATCAGTATTTTCCGTTGTCTCTATTGCAATGGCGCGGCCATTCCCTTGCCAATTCGCCGT
GGCGGAAAGTGCGGTATGTTTTCGGCTTGTTTCATTTGCAATTCGGTCTGCTCTGGCTGTTCACGCCCATTCAGCTGTTA
TTTTTTAACGGCATTTCGTTAAATAGTTTTATCGCCAATGTCATCGCAGTGCCGCCTTATAGCTTCGTTTTGGTCCCGTT
GATGTTATTTGCCGTAGTCACCCAAGGTGCGTGGCATTCGTGGCAGCTCGCCAACGATTTGGCGGAAAAAATCACCGCAC
TTTTGACGCCCTGGCAGGATGACTGGTTGGCAATTTCCATTCCGCACAGTTTATGGATAACCCTATGTTTAACCTTTCTT
TTTTTAGTGGCGCTCTATGTTATTTATAAACCGCCCAAACCGATAACATCCACTTTAGCATTGTCAAGGCAGCACCGCTT
TAAAGGATTTCATTTTAATCCGGAACGCGCCTTAAGTTTACCGTTACGAAAAAGCGCTTATTGCGTGGGCGGTGGGCTGA
TTGCCCTGTGTTGCCTGACGTTAATTTCTCAGTCTATTTCACGTCCGAACTGGCAATTGGAAACCTTGGACGTGGGGCAA
GGGTTGGCAACTTTAATCGTGAAAGACGGCAAAGGCGTGCTTTACGATACCGGCCCGAGTTGGAAGGGCGGCAGTATGGC
ACAATTGGAAATTCTGCCTTATTTACAACGGCAAGGCATTGATTTGGAATGGCTGATATTAAGCCATGACGACAACGATC
ACGCAGGTGGTGCCAAAGATATTTTAGCAATGTATCCCCATATTCAACTGACCACCGCTTCACAAAAGCGATATGGTTCC
CAAAACACCGAAAAAAATGACCGCACTTTTTGTCAAGCCGGTAAACAATGGCATTGGCAGGGGTTGCATTTTACCGTGCT
ATCACCGGAGAATATCGTGCCCCGTGCGGAAAATCGGGATTCCTGCACACTTTTATTAACCGATGGCACGCACCATATTT
TGCTGACGGGCGACGCGGATCTTAGCGTGGAATATAAGATCCTACCGAAACTTGGCAAAATCCATGTGTTACAAGTAGGG
CATCACGGTAGCAAAACCTCGACGGGGCAGGCATTAGTGCAACATATTCAACCGGACATTGCGCTGATTTCCAGCGGACG
CTGGAACCCATGGCATTTTCCCCATAAAGACGTGGTGGCGCGCCTGCAACAACAAGGATCACAAATTTATAATACGGCGC
ATAGCGGGCAAATCAGTCTATTGTTCTACAATGAAGAGATCAAAATTCAGACCGCGCGCGCTGAATTTTCGCCTTGGTAT
CGCAGATTGATTGGCTTGAGCACGAAATAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(213-486)

Domain of unknown function (DUF4131) (DUF4131)

(34-179)

Metallo-beta-lactamase superfamily (Lactamase_B)

(557-745)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

52.716

100

0.528