Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   SII_RS07125 Genome accession   NC_022237
Coordinates   1466896..1467627 (-) Length   243 a.a.
NCBI ID   WP_020999043.1    Uniprot ID   -
Organism   Streptococcus intermedius C270     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1461896..1472627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SII_RS07100 (SII_1397) rimP 1462575..1463063 (-) 489 WP_020999039.1 ribosome maturation factor RimP -
  SII_RS07105 (SII_1398) - 1463275..1463967 (-) 693 WP_041823281.1 VIT family protein -
  SII_RS07110 (SII_1399) trmB 1464373..1465008 (-) 636 WP_020999041.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  SII_RS07115 (SII_1400) ccrZ 1465005..1465802 (-) 798 WP_003073837.1 cell cycle regulator CcrZ -
  SII_RS07120 (SII_1401) - 1465853..1466899 (-) 1047 WP_020999042.1 ABC transporter permease -
  SII_RS07125 (SII_1402) pptA 1466896..1467627 (-) 732 WP_020999043.1 ABC transporter ATP-binding protein Regulator
  SII_RS07130 (SII_1403) - 1467696..1468106 (+) 411 WP_020999044.1 HIT family protein -
  SII_RS07135 (SII_1404) - 1468116..1468403 (+) 288 WP_020999045.1 hypothetical protein -
  SII_RS07140 (SII_1405) brpA 1468447..1469550 (-) 1104 WP_020999046.1 biofilm formation/cell division transcriptional regulator BrpA -
  SII_RS07145 (SII_1406) - 1469558..1470079 (-) 522 WP_009568049.1 GNAT family N-acetyltransferase -
  SII_RS07150 (SII_1407) tsaE 1470072..1470512 (-) 441 WP_009568047.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  SII_RS07155 (SII_1408) - 1470849..1472288 (-) 1440 WP_020999047.1 NCS2 family permease -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27132.61 Da        Isoelectric Point: 4.5487

>NTDB_id=61541 SII_RS07125 WP_020999043.1 1466896..1467627(-) (pptA) [Streptococcus intermedius C270]
MLEIKELTGGYINIPVLKDISFTVENGELVGLIGLNGAGKSTTINEIIGLLTPYKGEILIDGAKLQDNPIVYRKKIGFIP
ETPSLYEELTLREHIETVAMAYDVDQEVAFARVEQLLTKFRLKEKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPVAIADLIELLKDEKTKGKSILMSTHVLDSAERMCDSFVILHKGEIRAKGNLSELQSEFSMPEASLNEIYLALTEE
ASL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=61541 SII_RS07125 WP_020999043.1 1466896..1467627(-) (pptA) [Streptococcus intermedius C270]
ATGTTAGAAATAAAAGAGCTTACAGGTGGATATATAAATATCCCTGTTTTAAAAGATATCAGTTTCACGGTAGAAAATGG
TGAGCTGGTGGGCTTAATTGGTTTGAATGGTGCTGGAAAGTCTACAACAATCAATGAAATTATTGGACTTTTAACTCCTT
ATAAAGGAGAAATTTTAATTGACGGCGCTAAACTGCAAGATAATCCCATAGTTTATCGTAAGAAAATTGGATTTATTCCA
GAGACCCCTAGTTTATATGAGGAATTGACTTTAAGAGAGCACATTGAAACAGTTGCTATGGCTTATGATGTCGATCAAGA
GGTAGCTTTTGCGCGCGTGGAACAGTTATTGACCAAGTTTCGCTTGAAAGAAAAATTGGATTGGTTCCCCGTTCACTTTT
CAAAGGGAATGAAGCAAAAAGTCATGATTATTTGCGCCTTTGTAGTTGATCCGAGTCTCTTTATCGTGGATGAGCCATTT
TTGGGACTCGATCCAGTAGCGATTGCTGATTTGATAGAGCTTTTGAAAGATGAAAAGACGAAAGGCAAGTCTATCCTGAT
GAGTACGCATGTGTTGGACTCAGCAGAAAGAATGTGTGATTCATTCGTGATTTTGCACAAGGGGGAAATCCGAGCGAAAG
GTAACTTATCAGAGTTGCAATCAGAATTTTCTATGCCAGAAGCTAGCCTGAATGAGATCTATCTGGCATTGACAGAAGAG
GCAAGTCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus thermophilus LMD-9

71.13

98.354

0.7
  pptA Streptococcus salivarius strain HSISS4

70.711

98.354

0.695

Multiple sequence alignment