Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   LIN92_RS08940 Genome accession   NZ_CP085089
Coordinates   1834654..1835175 (-) Length   173 a.a.
NCBI ID   WP_005573910.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain 31S     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1829654..1840175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIN92_RS08920 rimI 1829891..1830334 (+) 444 WP_025298521.1 ribosomal protein S18-alanine N-acetyltransferase -
  LIN92_RS08925 recC 1830336..1833752 (-) 3417 WP_205765036.1 exodeoxyribonuclease V subunit gamma -
  LIN92_RS08930 - 1833764..1834003 (-) 240 WP_025298523.1 DUF5374 domain-containing protein -
  LIN92_RS08935 - 1833969..1834667 (-) 699 WP_038573332.1 type II secretion system protein J -
  LIN92_RS08940 comN 1834654..1835175 (-) 522 WP_005573910.1 type II secretion system protein Machinery gene
  LIN92_RS08960 pal 1835880..1836347 (-) 468 WP_025298525.1 peptidoglycan-associated lipoprotein Pal -
  LIN92_RS08965 tolB 1836362..1837642 (-) 1281 WP_005567685.1 Tol-Pal system beta propeller repeat protein TolB -
  LIN92_RS08970 tolA 1837677..1838885 (-) 1209 WP_005545586.1 cell envelope integrity protein TolA -
  LIN92_RS08975 tolR 1838902..1839324 (-) 423 WP_005545585.1 colicin uptake protein TolR -
  LIN92_RS08980 tolQ 1839410..1840099 (-) 690 WP_005545584.1 protein TolQ -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19832.99 Da        Isoelectric Point: 8.4896

>NTDB_id=615362 LIN92_RS08940 WP_005573910.1 1834654..1835175(-) (comN) [Aggregatibacter actinomycetemcomitans strain 31S]
MQKGFTLLEMLIALFIISLLLTLALPAWQQHSQQTILQKEQQKLYVFLRQIQARVENSTDIWLLLANRDPVGKRWCLTAQ
IKNSHLCDCLNPVACPQNVSAHFYYPAFAETVLVSKRYYPLEFTRLSGIRNTASTTCFVLQANQQRTLFSFFNVGSLKLK
DNQSLSACVNDEE

Nucleotide


Download         Length: 522 bp        

>NTDB_id=615362 LIN92_RS08940 WP_005573910.1 1834654..1835175(-) (comN) [Aggregatibacter actinomycetemcomitans strain 31S]
ATGCAAAAGGGATTCACTTTGTTGGAAATGTTAATAGCATTATTTATTATCAGCCTGTTACTGACACTGGCTTTGCCGGC
ATGGCAACAGCATTCGCAACAAACTATTCTGCAAAAAGAACAACAAAAACTTTATGTCTTTCTTCGTCAAATTCAGGCGC
GCGTGGAAAATTCTACGGACATCTGGTTGTTATTGGCAAATCGTGATCCTGTAGGAAAGCGCTGGTGTTTGACAGCGCAA
ATTAAAAATAGCCATTTGTGCGATTGCCTAAATCCTGTTGCTTGCCCGCAAAATGTTTCCGCCCATTTTTATTATCCCGC
TTTTGCTGAAACTGTGTTGGTGAGCAAGCGTTATTATCCTTTGGAGTTTACCCGTTTAAGTGGTATTCGGAATACGGCTT
CTACCACTTGTTTTGTGCTACAAGCCAATCAGCAGCGTACTTTGTTTTCGTTCTTTAATGTGGGCAGTTTGAAATTAAAG
GATAACCAATCTTTGAGTGCTTGTGTCAATGATGAAGAATAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

59.172

97.688

0.578