Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   LIN92_RS05950 Genome accession   NZ_CP085089
Coordinates   1172768..1175197 (-) Length   809 a.a.
NCBI ID   WP_249847420.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain 31S     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1167768..1180197
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIN92_RS05930 kdsB 1169004..1169777 (-) 774 WP_005567178.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LIN92_RS05935 - 1169779..1169958 (-) 180 WP_005567179.1 Trm112 family protein -
  LIN92_RS05940 lpxK 1169980..1170954 (-) 975 WP_005567180.1 tetraacyldisaccharide 4'-kinase -
  LIN92_RS05945 msbA 1170973..1172721 (-) 1749 WP_005567181.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  LIN92_RS05950 rec2 1172768..1175197 (-) 2430 WP_249847420.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LIN92_RS05955 dksA 1175495..1175932 (+) 438 WP_005556693.1 RNA polymerase-binding protein DksA -
  LIN92_RS05960 pcnB 1176049..1177515 (+) 1467 WP_249847423.1 polynucleotide adenylyltransferase PcnB -
  LIN92_RS05965 folK 1177508..1178008 (+) 501 WP_005586666.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  LIN92_RS05970 - 1178079..1178225 (-) 147 WP_005567188.1 hypothetical protein -
  LIN92_RS10335 - 1178306..1178440 (-) 135 WP_005567190.1 hypothetical protein -

Sequence

Protein


Download         Length: 809 a.a.        Molecular weight: 92144.96 Da        Isoelectric Point: 9.8478

>NTDB_id=615359 LIN92_RS05950 WP_249847420.1 1172768..1175197(-) (rec2) [Aggregatibacter actinomycetemcomitans strain 31S]
MSVSLDKLAIALIFSGLILLFLPDRFLLSWQTACYLLLLLCPLMLLAYALRQDKIKQIVMWLLILMIQSAYVHQSAISIL
TQADNLANLPKTVHREFTVKEILHQQHYQTLVIRAKLAENLPEQRIYAQWKLKQPVNPGERYAGNLRLRALSSRLNFDGF
DRQPWYFGKHITAWAEIKSAVKLENVFSLRQTALNQALQQTENLPRQGLLLALGFGERFRLDQKTWQIYQKTNTAHLIAI
SGLHIGLAMMLGFTLARLLQFALPTRYISPTFPILCGFIFALLYSQLAGLAIPTLRAMIALAMLYAIQYWRRYWTVWQFL
LRVVALLIFIDPLMLLSTSFWLSVGAVTCLIVWYQYFPLSLLQWRGHSLANSPWRKVRYVFGLFHLQFGLLWLFTPIQLL
FFNGISLNSFIANVIAVPPYSFVLVPLVLFAVVTQGAWHSWQLANDLAEKITALLTPWQDDWLAISIPHSLWITLCLTFL
FLVALYVIYKPPKPITSTLALSRQHRFKGFHFNPERALSLPLRKSAYCVGGGLIALCCLTLISQSISRPNWQLETLDVGQ
GLATLIVKDGKGVLYDTGPSWKGGSMAQLEILPYLQRQGIDLEWLILSHDDNDHAGGAKDILAMYPHIQLTTASQKRYGS
QNTEKNDRTFCQAGKQWHWQGLHFTVLSPENIVPRAENRDSCTLLLTDGTHHILLTGDADLSVEYKILPKLGKIHVLQVG
HHGSKTSTGQALVQHIQPDIALISSGRWNPWHFPHKDVVARLQQQGSQIYNTAHSGQISLLFYNEEIKIQTARAEFSPWY
RRLIGLSTK

Nucleotide


Download         Length: 2430 bp        

>NTDB_id=615359 LIN92_RS05950 WP_249847420.1 1172768..1175197(-) (rec2) [Aggregatibacter actinomycetemcomitans strain 31S]
GTGAGCGTTTCGTTGGATAAGTTGGCTATAGCCCTGATTTTTAGCGGTTTAATATTATTGTTTTTGCCCGATCGCTTTTT
ATTATCGTGGCAAACGGCGTGCTATTTACTCCTCTTATTATGTCCACTCATGTTGCTTGCTTATGCCCTGCGACAGGACA
AAATCAAGCAAATAGTAATGTGGCTACTGATCTTGATGATTCAGTCCGCTTACGTCCACCAATCGGCAATTTCCATACTG
ACCCAGGCGGATAATCTTGCCAATCTGCCGAAAACCGTTCACCGCGAATTTACCGTCAAGGAAATTCTGCATCAGCAGCA
TTATCAAACCCTGGTTATTCGCGCCAAACTCGCCGAAAATCTTCCCGAACAACGTATTTACGCGCAATGGAAACTCAAGC
AACCAGTCAACCCCGGCGAACGTTACGCAGGCAATTTACGCTTGCGAGCGCTTTCTTCCCGCCTGAATTTTGACGGTTTT
GACCGCCAGCCATGGTATTTCGGCAAGCACATCACCGCTTGGGCAGAGATTAAAAGTGCGGTCAAATTGGAAAACGTTTT
TTCGTTACGCCAAACCGCTCTCAATCAAGCCTTACAACAAACGGAGAATTTACCCCGACAAGGCTTGTTGCTGGCACTCG
GTTTTGGCGAACGTTTCCGCTTAGACCAAAAAACTTGGCAAATTTATCAAAAAACAAATACGGCGCATTTAATTGCCATT
TCAGGGCTGCATATCGGACTGGCGATGATGCTGGGTTTTACCTTGGCGCGTCTACTGCAATTTGCCTTGCCGACGCGTTA
CATCAGCCCGACATTTCCGATTCTGTGCGGATTCATTTTTGCGTTGTTATACAGCCAACTGGCGGGGCTTGCTATTCCGA
CTTTACGCGCTATGATTGCGTTAGCCATGCTCTACGCGATTCAGTATTGGCGACGATATTGGACGGTATGGCAATTCTTG
TTAAGAGTGGTTGCCTTGCTGATTTTTATCGATCCGCTCATGTTACTTTCCACCAGCTTTTGGTTGTCGGTGGGCGCAGT
GACCTGTCTGATTGTTTGGTATCAGTATTTTCCGTTGTCTCTATTGCAATGGCGCGGCCATTCCCTTGCCAATTCGCCGT
GGCGGAAAGTGCGGTATGTTTTCGGCTTGTTTCATTTGCAATTCGGTCTGCTCTGGCTGTTCACGCCCATTCAGCTGTTA
TTTTTTAACGGCATTTCGTTAAATAGTTTTATCGCCAATGTCATCGCAGTGCCGCCTTATAGCTTCGTTTTGGTCCCGTT
GGTGTTATTTGCCGTAGTCACCCAAGGTGCGTGGCATTCGTGGCAGCTCGCCAACGATTTGGCGGAAAAAATCACCGCAC
TTTTGACGCCCTGGCAGGATGACTGGTTGGCAATTTCCATTCCGCACAGTTTATGGATAACCCTATGTTTAACCTTTCTT
TTTTTAGTGGCGCTCTATGTTATTTATAAACCGCCCAAACCGATAACATCCACTTTAGCATTGTCAAGGCAGCACCGCTT
TAAAGGATTTCATTTTAATCCGGAACGCGCCTTAAGTTTACCGTTACGAAAAAGCGCTTATTGCGTGGGCGGTGGGCTGA
TTGCCCTGTGTTGCCTGACGTTAATTTCTCAGTCTATTTCACGTCCGAACTGGCAATTGGAAACCTTGGACGTGGGGCAA
GGGTTGGCAACTTTAATCGTGAAAGACGGCAAAGGCGTGCTTTACGATACCGGCCCGAGTTGGAAGGGCGGCAGTATGGC
ACAATTGGAAATTCTGCCTTATTTACAACGGCAAGGCATTGATTTGGAATGGCTGATATTAAGCCATGACGACAACGATC
ACGCAGGTGGTGCCAAAGATATTTTAGCAATGTATCCCCATATTCAACTGACCACCGCTTCACAAAAGCGATATGGTTCC
CAAAACACCGAAAAAAATGACCGCACTTTTTGTCAAGCCGGTAAACAATGGCATTGGCAGGGGTTGCATTTTACCGTGCT
ATCACCGGAGAATATCGTGCCCCGTGCGGAAAATCGGGATTCCTGCACACTTTTATTAACCGATGGCACGCACCATATTT
TGCTGACGGGCGACGCGGATCTTAGCGTGGAATATAAGATCCTACCGAAACTTGGCAAAATCCATGTGTTACAAGTAGGG
CATCACGGTAGCAAAACCTCGACGGGGCAGGCATTAGTGCAACATATTCAACCGGACATTGCGCTGATTTCCAGCGGACG
CTGGAACCCATGGCATTTTCCCCATAAAGACGTGGTGGCGCGCCTGCAACAACAAGGATCACAAATTTATAATACGGCGC
ATAGCGGGCAAATCAGTCTATTGTTCTACAATGAAGAGATCAAAATTCAGACCGCGCGCGCTGAATTTTCGCCTTGGTAT
CGCAGATTGATTGGCTTGAGCACGAAATAA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(34-179)

Competence protein (Competence)

(213-486)

Metallo-beta-lactamase superfamily (Lactamase_B)

(557-745)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

52.593

100

0.527