Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   LIO33_RS08045 Genome accession   NZ_CP085088
Coordinates   1623257..1623991 (-) Length   244 a.a.
NCBI ID   WP_012027751.1    Uniprot ID   A0A0Z9J9V6
Organism   Streptococcus suis strain Ssuis_MA1     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1618257..1628991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIO33_RS08020 nusA 1618484..1619626 (-) 1143 WP_004194726.1 transcription termination factor NusA -
  LIO33_RS08025 rimP 1619700..1620170 (-) 471 WP_002942369.1 ribosome maturation factor RimP -
  LIO33_RS08030 trmB 1620741..1621379 (-) 639 WP_002939002.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  LIO33_RS08035 ccrZ 1621376..1622170 (-) 795 WP_002942360.1 cell cycle regulator CcrZ -
  LIO33_RS08040 - 1622220..1623260 (-) 1041 WP_012027749.1 ABC transporter permease -
  LIO33_RS08045 pptA 1623257..1623991 (-) 735 WP_012027751.1 ABC transporter ATP-binding protein Regulator
  LIO33_RS08050 - 1624054..1624467 (+) 414 WP_012027752.1 HIT family protein -
  LIO33_RS08055 - 1624469..1624771 (+) 303 WP_012027753.1 methyl-accepting chemotaxis protein -
  LIO33_RS08060 - 1624880..1626073 (-) 1194 WP_012027754.1 LCP family protein -
  LIO33_RS08065 - 1626070..1626597 (-) 528 WP_012027755.1 GNAT family N-acetyltransferase -
  LIO33_RS08070 tsaE 1626590..1627030 (-) 441 WP_012775330.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  LIO33_RS08075 - 1627131..1628795 (-) 1665 WP_012028485.1 DAK2 domain-containing protein -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26788.09 Da        Isoelectric Point: 4.3999

>NTDB_id=615338 LIO33_RS08045 WP_012027751.1 1623257..1623991(-) (pptA) [Streptococcus suis strain Ssuis_MA1]
MLEVKNVTGGYVNIPVLKDVSFTVEDGQLVGLIGLNGAGKSTTIKEIIGLLTPYQGQIVIDGLTLLQGAENYRKKIGFIP
ETPSLYEELTLKEHLEVVAMAYDLSWEQAWGRVEHLLKLFRLDEKLDWFPVNFSKGMKQKVMIICAFMVEPSLLIVDEPF
LGLDPVAISDLIALLGEEKSKGTSILMSTHVLDSAEKMCDSFVILHQGQVRATGNLEELQSAFGMDGASLNEIYLALTQE
GVAG

Nucleotide


Download         Length: 735 bp        

>NTDB_id=615338 LIO33_RS08045 WP_012027751.1 1623257..1623991(-) (pptA) [Streptococcus suis strain Ssuis_MA1]
ATGTTAGAAGTAAAAAATGTAACTGGAGGATATGTCAATATCCCAGTTTTGAAAGATGTATCTTTTACCGTTGAGGATGG
TCAATTAGTTGGTCTAATTGGTTTAAATGGTGCAGGGAAATCAACGACTATTAAGGAAATTATCGGTCTTTTGACACCCT
ATCAAGGACAGATTGTAATTGACGGCCTAACTTTGCTACAAGGGGCTGAAAATTATCGGAAGAAAATTGGGTTTATCCCT
GAAACACCAAGTTTGTATGAAGAACTAACCCTCAAAGAGCACTTGGAAGTGGTAGCAATGGCCTATGATTTATCCTGGGA
GCAAGCTTGGGGACGTGTTGAGCACTTGTTAAAACTGTTTCGCTTGGATGAGAAATTGGACTGGTTTCCTGTCAATTTTT
CAAAGGGAATGAAGCAGAAGGTCATGATTATTTGTGCTTTTATGGTGGAGCCGAGTCTGTTGATTGTTGATGAGCCTTTT
CTGGGATTAGACCCTGTGGCTATCTCTGATTTAATCGCTCTTTTGGGGGAAGAAAAATCTAAGGGCACTTCAATCCTCAT
GTCCACTCACGTTCTTGACTCAGCTGAGAAAATGTGCGACTCTTTTGTGATTTTACATCAGGGACAGGTCCGTGCAACTG
GAAATTTGGAGGAGCTACAAAGCGCATTTGGTATGGATGGTGCAAGTCTGAATGAAATTTATCTGGCCTTGACGCAAGAA
GGAGTGGCTGGATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Z9J9V6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

74.895

97.951

0.734
  pptA Streptococcus thermophilus LMD-9

73.222

97.951

0.717