Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   SII_RS06410 Genome accession   NC_022237
Coordinates   1318218..1318931 (+) Length   237 a.a.
NCBI ID   WP_014829589.1    Uniprot ID   A0AAE8G0A0
Organism   Streptococcus intermedius C270     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1313218..1323931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SII_RS06400 (SII_1262) treC 1314216..1315859 (-) 1644 WP_020998953.1 alpha,alpha-phosphotrehalase -
  SII_RS06405 (SII_1263) treP 1316027..1318039 (-) 2013 WP_020998954.1 PTS system trehalose-specific EIIBC component -
  SII_RS06410 (SII_1264) treR 1318218..1318931 (+) 714 WP_014829589.1 trehalose operon repressor Regulator
  SII_RS06415 (SII_1265) - 1318986..1320326 (-) 1341 WP_003078229.1 hemolysin family protein -
  SII_RS06420 (SII_1266) - 1320415..1322061 (-) 1647 WP_020998955.1 phosphoenolpyruvate carboxykinase (ATP) -
  SII_RS06425 (SII_1267) - 1322282..1323406 (-) 1125 WP_003073569.1 AI-2E family transporter -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27753.84 Da        Isoelectric Point: 8.9546

>NTDB_id=61532 SII_RS06410 WP_014829589.1 1318218..1318931(+) (treR) [Streptococcus intermedius C270]
MKKYEQIFKLLKQDILNETYQIDDYLPSEHELVQTYKVSRDTIRKSLDLLQKAELIQKIRGQGSKVIKQAQIDFPVSNLT
SYQELVQQHGINSKTNLIQLEKITVDKKLSNLTGFPEYRLVWRIVRQRVVDDVASVLDIDYLDKTLVPSLTREIAEQSIY
AYLEEELGLRIAYAQKEITIDPATNRDQILMDIGTDQHVVSVKSKVYLADGQQFQFTDSRHKLEKFRFIDFAKRQKR

Nucleotide


Download         Length: 714 bp        

>NTDB_id=61532 SII_RS06410 WP_014829589.1 1318218..1318931(+) (treR) [Streptococcus intermedius C270]
ATGAAAAAATATGAACAAATTTTCAAACTCCTAAAACAGGATATTCTAAATGAAACATATCAGATCGATGATTATCTCCC
TAGTGAACACGAACTCGTACAAACTTACAAAGTCAGTCGTGACACCATTCGTAAGTCACTTGACTTACTTCAAAAAGCAG
AGCTCATCCAAAAAATAAGAGGACAAGGTTCTAAAGTAATCAAACAAGCACAGATTGATTTTCCTGTCTCCAACCTGACT
AGCTACCAAGAACTCGTGCAGCAGCATGGAATAAATTCTAAAACTAATCTCATCCAATTAGAGAAAATTACAGTTGATAA
AAAATTATCTAATCTCACTGGTTTTCCTGAATATCGTCTGGTATGGCGAATTGTCCGCCAAAGAGTAGTCGATGACGTCG
CTTCTGTTCTAGATATTGATTATCTTGATAAAACTCTTGTCCCTTCCTTAACTAGAGAAATAGCAGAACAATCGATTTAT
GCTTATTTAGAAGAAGAATTAGGACTGCGCATTGCCTATGCCCAAAAAGAAATTACAATTGATCCAGCTACAAACCGTGA
CCAAATCTTGATGGATATCGGAACTGACCAGCATGTCGTTTCTGTCAAATCCAAAGTTTACCTTGCAGATGGACAACAAT
TTCAATTTACAGATAGTCGCCATAAACTCGAAAAATTCCGTTTTATTGACTTTGCTAAGCGACAAAAACGCTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(90-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

63.559

99.578

0.633

Multiple sequence alignment