Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   NQZ93_RS08955 Genome accession   NZ_CP102141
Coordinates   1804161..1806986 (-) Length   941 a.a.
NCBI ID   WP_024381958.1    Uniprot ID   -
Organism   Streptococcus suis strain DNR48     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1799161..1811986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ93_RS08930 (NQZ93_08930) - 1800505..1801470 (+) 966 WP_024381954.1 LacI family DNA-binding transcriptional regulator -
  NQZ93_RS08935 (NQZ93_08935) nusB 1801550..1801969 (-) 420 WP_024381955.1 transcription antitermination factor NusB -
  NQZ93_RS08940 (NQZ93_08940) - 1801959..1802351 (-) 393 WP_024381956.1 Asp23/Gls24 family envelope stress response protein -
  NQZ93_RS08945 (NQZ93_08945) efp 1802379..1802936 (-) 558 WP_002942436.1 elongation factor P -
  NQZ93_RS08950 (NQZ93_08950) - 1803000..1804061 (-) 1062 WP_024381957.1 Xaa-Pro peptidase family protein -
  NQZ93_RS08955 (NQZ93_08955) uvrA 1804161..1806986 (-) 2826 WP_024381958.1 excinuclease ABC subunit UvrA Machinery gene
  NQZ93_RS08960 (NQZ93_08960) - 1807780..1808724 (+) 945 WP_002939248.1 magnesium transporter CorA family protein -
  NQZ93_RS08965 (NQZ93_08965) - 1808740..1809396 (+) 657 WP_012027735.1 DUF1129 domain-containing protein -
  NQZ93_RS08970 (NQZ93_08970) rpsR 1809686..1809925 (-) 240 WP_002939250.1 30S ribosomal protein S18 -
  NQZ93_RS08975 (NQZ93_08975) ssbA 1809958..1810452 (-) 495 WP_002942409.1 single-stranded DNA-binding protein Machinery gene
  NQZ93_RS08980 (NQZ93_08980) rpsF 1810464..1810754 (-) 291 WP_002942403.1 30S ribosomal protein S6 -
  NQZ93_RS08985 (NQZ93_08985) - 1810926..1811915 (-) 990 WP_014736331.1 lipoate--protein ligase -

Sequence

Protein


Download         Length: 941 a.a.        Molecular weight: 103890.07 Da        Isoelectric Point: 6.1096

>NTDB_id=615312 NQZ93_RS08955 WP_024381958.1 1804161..1806986(-) (uvrA) [Streptococcus suis strain DNR48]
MQENIVIHGARAHNLKNIDVTIPREKLVVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLGNMDKPDVDSIEGL
SPAISIDQKTTSRNPRSTVGTATEINDYLRLLYARVGVPYCINGHGAISASSVEQIVDEVLELPERQRLQILAPIVRKKK
GQHKTIFEKVQKDGYVRVRVNGDVYDVSEVPELSKSKAHNIEVVVDRIVIKEGIRSRLFDSIEAALRIADGYVIIDTMDE
KEMLFSEYYACPVCGFTVPELEPRLFSFNAPFGSCSDCDGLGMKLEVDADLIVPDTSKTLRDGALAPWNPISSNYYPQML
EQAMNHFGVDMDKPFEELTEEEKNLIFNGSDGKEFHFHYENEFGGVRDIDIPFEGLITNINRRYRETNSDYTRTVMKTYM
NELTCGTCHGYRLNDQALSVKVGGEEGLHIGQLSDLSVADHLQVIEHLTLSENEATIATPIVKEIKDRLSFLNNVGLNYL
TLSRAAGTLSGGESQRIRLATQIGSNLSGVLYILDEPSIGLHQRDNDRLIASLKKMRDLGNTLIVVEHDEDTMREADWLI
DIGPGAGVFGGEIVASGTPAQVAKNKKSITGQYLSGKREIPVPLERRVGNGRFLEVTGAKENNLQDVTVRFPLGKFVAVT
GVSGSGKSTLVNSILKKAIAQKLNRNSDKPGKFKSISGIEHLDRLIDIDQSPIGRTPRSNPATYTGVFDDIRDLFAQTNE
AKIRGYKKGRFSFNVKGGRCEACSGDGIIKIEMHFLPDVFVPCEVCHGHRYNSETLEVHYKEKNIAQVLDMTVNDAVEFF
KHIPKIERKLRTIQDVGLGYVTLGQPATTLSGGEAQRMKLASELHKRSTGKSLYILDEPTTGLHTEDIAQLLKVLARFVD
DGNTVLVIEHNLDVIKTADHIIDMGPEGGVGGGTVVATGTPEEVAANPASFTGQYLKMKLK

Nucleotide


Download         Length: 2826 bp        

>NTDB_id=615312 NQZ93_RS08955 WP_024381958.1 1804161..1806986(-) (uvrA) [Streptococcus suis strain DNR48]
ATGCAAGAAAATATTGTGATTCATGGGGCTCGTGCCCATAATTTGAAAAATATTGATGTGACCATTCCGCGTGAGAAGTT
GGTGGTGGTGACTGGTTTGTCAGGCTCTGGTAAGTCGAGTTTGGCTTTTGATACCCTGTATGCCGAAGGCCAACGTCGTT
ATGTGGAATCTTTGTCTGCCTATGCTCGTCAGTTCTTGGGCAACATGGACAAGCCAGATGTGGATTCCATAGAGGGACTC
AGCCCTGCTATTTCCATTGACCAAAAAACCACGTCGCGGAATCCGCGTTCGACAGTCGGTACAGCGACGGAAATCAATGA
CTATCTCCGTTTGCTCTATGCTCGAGTTGGAGTGCCTTACTGTATCAACGGTCACGGGGCGATTTCGGCTTCTTCGGTGG
AGCAGATTGTTGATGAGGTTTTGGAATTACCAGAGCGTCAGCGACTGCAGATTTTAGCACCGATTGTACGGAAGAAAAAG
GGTCAGCACAAGACCATTTTTGAGAAGGTGCAGAAGGACGGCTATGTTCGGGTGCGGGTCAATGGGGATGTCTATGATGT
GTCGGAAGTGCCTGAGTTGTCCAAGAGCAAGGCTCATAATATTGAAGTCGTCGTCGATCGAATTGTCATCAAAGAGGGCA
TTCGTTCGCGGCTCTTCGATTCCATAGAAGCGGCCCTGCGGATTGCGGACGGCTATGTCATCATCGATACCATGGACGAG
AAGGAAATGCTTTTCTCTGAGTACTATGCCTGCCCAGTTTGTGGCTTTACAGTGCCCGAGTTGGAGCCTCGTCTTTTCTC
TTTCAATGCTCCTTTTGGGTCTTGTAGCGACTGTGACGGTTTGGGCATGAAGTTGGAAGTGGATGCGGATTTGATTGTCC
CAGATACCAGTAAGACCTTGCGTGACGGTGCCTTGGCTCCGTGGAATCCAATTTCTTCCAACTACTATCCTCAGATGCTG
GAACAGGCTATGAACCACTTTGGTGTGGACATGGACAAGCCTTTCGAGGAATTGACGGAAGAGGAGAAGAACCTGATTTT
CAACGGATCGGACGGCAAAGAATTCCATTTCCACTATGAAAATGAATTCGGTGGGGTGCGTGATATCGATATTCCCTTTG
AAGGCTTGATTACCAACATTAACCGTCGCTACCGTGAAACCAACAGTGACTATACGCGGACTGTTATGAAGACTTACATG
AATGAGCTGACCTGTGGAACCTGCCACGGCTATCGCCTCAATGACCAAGCCCTGTCTGTCAAAGTCGGTGGCGAAGAGGG
GCTGCATATCGGACAATTATCAGACTTGTCCGTGGCGGATCATTTGCAAGTCATTGAACATCTGACCTTGTCTGAAAATG
AAGCGACGATTGCGACGCCCATTGTCAAGGAAATCAAGGATCGCCTGTCCTTCCTAAATAACGTTGGTCTAAATTACCTA
ACGCTTTCACGAGCAGCGGGGACGCTTTCTGGTGGTGAGAGCCAGCGGATTCGTTTGGCGACTCAGATTGGATCCAACCT
GTCAGGTGTCCTCTATATTCTGGACGAGCCGTCGATTGGTCTGCACCAGCGGGACAATGATCGTCTCATTGCCAGTCTTA
AGAAAATGCGGGACTTGGGCAATACCTTGATTGTGGTGGAACATGATGAGGACACCATGCGGGAGGCGGACTGGTTGATT
GATATCGGTCCGGGTGCGGGTGTCTTCGGTGGAGAAATCGTGGCCTCTGGAACGCCTGCCCAAGTAGCTAAAAATAAAAA
GTCCATTACAGGCCAGTACCTGTCTGGCAAACGTGAAATTCCAGTTCCTTTGGAGCGTCGTGTTGGAAACGGTCGATTCT
TAGAGGTGACCGGGGCCAAGGAAAACAACCTGCAAGATGTGACTGTTCGTTTCCCACTTGGGAAATTTGTAGCGGTGACA
GGGGTGTCTGGCTCAGGCAAATCAACCCTGGTCAACTCCATTTTGAAAAAAGCTATCGCCCAGAAACTCAATCGTAATTC
GGACAAGCCAGGTAAATTCAAGTCCATTTCAGGAATTGAACACTTGGACCGCCTGATTGACATTGATCAAAGCCCGATTG
GACGGACACCGCGTTCCAACCCAGCCACCTACACAGGTGTCTTCGATGATATTCGGGATTTGTTTGCCCAGACCAATGAA
GCCAAGATTCGTGGCTACAAGAAAGGTCGTTTCTCCTTTAACGTCAAAGGTGGACGGTGTGAGGCTTGTTCTGGTGACGG
GATTATCAAGATTGAAATGCACTTCCTGCCAGATGTCTTTGTACCTTGTGAAGTCTGTCATGGACACCGTTACAATTCTG
AAACCTTGGAAGTACATTACAAGGAGAAAAATATCGCCCAAGTCCTTGATATGACAGTCAATGATGCGGTCGAGTTCTTC
AAACACATTCCAAAAATTGAGCGGAAACTCCGCACCATTCAAGATGTGGGCTTGGGCTACGTTACTCTAGGTCAGCCAGC
AACGACCCTATCAGGTGGGGAAGCCCAGCGGATGAAGTTGGCTTCTGAACTCCACAAGCGGTCAACTGGAAAATCCTTGT
ATATCTTGGATGAGCCGACGACAGGCTTGCATACGGAGGACATTGCCCAGTTGCTCAAGGTCTTGGCTCGTTTTGTTGAT
GATGGCAATACCGTGCTGGTCATCGAGCACAATCTGGATGTCATCAAGACAGCCGACCACATTATCGACATGGGGCCAGA
AGGCGGTGTCGGCGGTGGTACCGTTGTTGCGACAGGAACGCCAGAAGAAGTAGCAGCTAATCCAGCCAGCTTTACAGGCC
AGTATCTGAAAATGAAGTTGAAATAA

Domains

Predicted by InterProScan.

UvrA interaction domain (UvrA_inter)

(132-238)

ABC transporter (ABC_tran)

(624-860)

UvrA DNA-binding domain (UvrA_DNA-bind)

(288-396)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

89.043

99.894

0.889
  uvrA Streptococcus pneumoniae TIGR4

89.043

99.894

0.889
  uvrA Streptococcus pneumoniae D39

89.043

99.894

0.889