Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYE   Type   Machinery gene
Locus tag   LIO33_RS00770 Genome accession   NZ_CP085088
Coordinates   121475..121768 (+) Length   97 a.a.
NCBI ID   WP_011921722.1    Uniprot ID   -
Organism   Streptococcus suis strain Ssuis_MA1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 116475..126768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIO33_RS00740 - 117504..117869 (+) 366 WP_002936568.1 DUF1033 family protein -
  LIO33_RS00745 - 117904..118847 (-) 944 Protein_114 S66 peptidase family protein -
  LIO33_RS00750 comYA 118933..119883 (+) 951 WP_011921718.1 competence type IV pilus ATPase ComGA Machinery gene
  LIO33_RS00755 comYB 119795..120832 (+) 1038 WP_011921719.1 competence type IV pilus assembly protein ComGB Machinery gene
  LIO33_RS00760 comYC 120834..121115 (+) 282 WP_011921720.1 competence type IV pilus major pilin ComGC Machinery gene
  LIO33_RS00765 comGD 121096..121503 (+) 408 WP_011921721.1 competence type IV pilus minor pilin ComGD -
  LIO33_RS00770 comYE 121475..121768 (+) 294 WP_011921722.1 competence type IV pilus minor pilin ComGE Machinery gene
  LIO33_RS00775 comGF/cglF 121755..122189 (+) 435 WP_011922561.1 competence type IV pilus minor pilin ComGF Machinery gene
  LIO33_RS00780 comGG 122167..122577 (+) 411 WP_011921724.1 competence type IV pilus minor pilin ComGG -
  LIO33_RS00785 comYH 122634..123587 (+) 954 WP_011922562.1 class I SAM-dependent methyltransferase Machinery gene
  LIO33_RS00790 - 123637..124824 (+) 1188 WP_012775422.1 acetate kinase -
  LIO33_RS00795 - 125139..125690 (+) 552 WP_012774908.1 folate family ECF transporter S component -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10817.70 Da        Isoelectric Point: 9.8348

>NTDB_id=615307 LIO33_RS00770 WP_011921722.1 121475..121768(+) (comYE) [Streptococcus suis strain Ssuis_MA1]
MVAIRKQKNKAYILLESLVALATLVTICSLILSAVDAGRRRQVWELEQQEVFNLAQMAVQTKQDDLALNGVAVQVQRTAE
RVAVFHEGKEVLSVVKK

Nucleotide


Download         Length: 294 bp        

>NTDB_id=615307 LIO33_RS00770 WP_011921722.1 121475..121768(+) (comYE) [Streptococcus suis strain Ssuis_MA1]
GTGGTCGCTATAAGAAAACAGAAGAATAAGGCTTATATTTTGCTAGAAAGTCTGGTTGCCCTTGCGACTCTAGTGACCAT
TTGCAGCTTGATTTTATCAGCTGTGGATGCAGGTCGTAGGCGACAGGTTTGGGAATTGGAACAACAGGAGGTTTTCAACT
TAGCACAGATGGCTGTCCAGACAAAACAAGATGACCTAGCCTTAAACGGAGTTGCAGTTCAGGTTCAACGAACTGCGGAA
AGAGTTGCGGTTTTCCATGAAGGAAAGGAGGTTTTATCGGTTGTTAAAAAGTAA

Domains

Predicted by InterproScan.

Type II secretory pathway pseudopilin (ComGE)

(13-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYE Streptococcus mutans UA140

51.546

100

0.515
  comYE Streptococcus mutans UA159

51.546

100

0.515
  comGE/cglE Streptococcus pneumoniae Rx1

38.043

94.845

0.361
  comGE/cglE Streptococcus pneumoniae D39

38.043

94.845

0.361
  comGE/cglE Streptococcus pneumoniae R6

38.043

94.845

0.361
  comGE/cglE Streptococcus pneumoniae TIGR4

38.043

94.845

0.361