Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   NQZ93_RS04280 Genome accession   NZ_CP102141
Coordinates   882429..884198 (+) Length   589 a.a.
NCBI ID   WP_024381804.1    Uniprot ID   -
Organism   Streptococcus suis strain DNR48     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 877429..889198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ93_RS04250 (NQZ93_04250) - 878240..878995 (+) 756 WP_024381800.1 class I SAM-dependent methyltransferase -
  NQZ93_RS04255 (NQZ93_04255) pcp 878992..879639 (+) 648 WP_024381801.1 pyroglutamyl-peptidase I -
  NQZ93_RS04260 (NQZ93_04260) - 879639..879947 (+) 309 WP_024381802.1 DUF4298 domain-containing protein -
  NQZ93_RS04265 (NQZ93_04265) rpsP 880072..880344 (+) 273 WP_002940682.1 30S ribosomal protein S16 -
  NQZ93_RS04270 (NQZ93_04270) - 880366..880608 (+) 243 WP_012028079.1 KH domain-containing protein -
  NQZ93_RS04275 (NQZ93_04275) rcrP 880684..882420 (+) 1737 WP_257115394.1 ABC transporter ATP-binding protein Regulator
  NQZ93_RS04280 (NQZ93_04280) rcrQ 882429..884198 (+) 1770 WP_024381804.1 ABC transporter ATP-binding protein Regulator
  NQZ93_RS04285 (NQZ93_04285) - 884255..885178 (-) 924 WP_024381805.1 polysaccharide deacetylase family protein -
  NQZ93_RS04290 (NQZ93_04290) - 885283..886569 (+) 1287 WP_024381806.1 homoserine dehydrogenase -
  NQZ93_RS04295 (NQZ93_04295) thrB 886573..887433 (+) 861 WP_024381807.1 homoserine kinase -
  NQZ93_RS04300 (NQZ93_04300) murB 887667..888575 (+) 909 WP_002938670.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 65843.78 Da        Isoelectric Point: 5.2701

>NTDB_id=615283 NQZ93_RS04280 WP_024381804.1 882429..884198(+) (rcrQ) [Streptococcus suis strain DNR48]
MKNRSVFTRVWDYLRRYQSSVFLAVFLKTISAVMNALEPFVLGLIITELTKNLLDIANGVEGAQINYSYIAIILAIYALR
ALLYEIGAYGSNYFMTKAVQGATKELRQDLSHKINKIPVSYFDKHQYGDLLGRFTSDVETVSNALQQSFLQLVNAVLTLS
LAIFMCFWLDVSLALVVITLVPVTYFGSKFVMGKSQPYFKQQADALGRLNGFVQENLTGFNVLKLYGREEISTEEFRQIT
ADLQEVGFKASFMSGLLMPLVHGFSNIAYVVVALLSGLKVLAGTLTVGNMQAFVQYVWQISQPVQTLTQLAPQLQSAKSS
LERIFSVLDELDEEDANALELTESLTGQVSFEQVEFGYSEDKPLIRNFNLDVKPGEMVAIVGPTGAGKTTLINLLMRFYD
VTSGAIKVDGQDIRNLSRQSYRSQFGMVLQDAWLYEGTIKENLRFGRLDATDEEIVEAAKAANVDHFIRTLPGGYNMEMN
QESSNISQGQKQLLTIARALLADPAILILDEATSSVDTRLELLIQKAMKRLMKGRTSFVIAHRLSTIQEADKILVLKDGQ
IIEQGNHESLLADKGFYYNLYQSQFSESK

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=615283 NQZ93_RS04280 WP_024381804.1 882429..884198(+) (rcrQ) [Streptococcus suis strain DNR48]
ATGAAGAATAGATCAGTATTTACCCGTGTTTGGGACTATTTGCGTCGTTACCAATCTTCTGTATTTTTAGCCGTTTTTCT
AAAGACCATCAGTGCAGTTATGAATGCCTTAGAACCCTTTGTGCTGGGGCTTATCATTACAGAATTGACCAAGAATTTGT
TGGATATTGCTAATGGAGTAGAAGGAGCGCAGATTAACTATTCCTACATTGCCATCATACTTGCCATCTATGCCCTTCGC
GCCCTTCTATATGAAATCGGTGCCTACGGTTCTAACTATTTTATGACCAAGGCAGTGCAGGGAGCAACTAAGGAACTACG
TCAGGATTTGAGCCACAAAATTAACAAGATTCCAGTATCTTATTTTGACAAGCACCAGTATGGTGATTTACTCGGACGTT
TTACAAGCGATGTGGAGACTGTTTCAAACGCCCTGCAACAAAGTTTTCTCCAGCTAGTCAATGCCGTTCTGACCCTCTCT
CTAGCCATTTTCATGTGTTTCTGGTTGGATGTATCCCTAGCACTTGTAGTCATAACCTTGGTTCCAGTGACCTATTTTGG
TTCTAAGTTTGTCATGGGCAAATCCCAGCCATATTTCAAGCAGCAGGCTGATGCCCTAGGTCGTTTGAACGGCTTTGTCC
AAGAAAATCTGACTGGTTTTAACGTTCTCAAACTCTACGGCCGTGAAGAAATTTCTACAGAAGAGTTTCGCCAGATTACC
GCAGATTTGCAGGAAGTTGGTTTCAAGGCTAGTTTCATGTCTGGTTTGCTCATGCCTCTAGTTCACGGCTTCTCAAACAT
CGCCTACGTTGTCGTCGCCCTGCTATCTGGATTGAAAGTTCTTGCAGGTACATTGACGGTGGGTAATATGCAGGCCTTCG
TCCAATACGTCTGGCAGATTTCTCAGCCAGTCCAAACCTTGACCCAATTGGCACCACAGTTGCAGTCTGCCAAATCTTCC
CTTGAACGCATCTTTTCAGTCCTAGATGAGCTTGATGAAGAAGACGCCAATGCGCTGGAGTTGACAGAAAGTCTGACAGG
ACAAGTCAGCTTTGAACAGGTCGAATTTGGCTATTCAGAAGACAAGCCGCTTATCCGTAACTTTAATCTTGATGTTAAGC
CAGGTGAAATGGTTGCTATCGTTGGACCAACGGGGGCAGGTAAGACAACCCTTATCAACTTGCTCATGCGTTTCTATGAT
GTCACATCAGGTGCTATCAAGGTAGATGGGCAGGATATTCGAAATCTTTCACGTCAATCCTACCGTAGTCAATTTGGTAT
GGTCTTGCAGGATGCTTGGCTCTATGAAGGGACCATCAAGGAAAACCTACGTTTTGGACGTCTGGATGCGACGGATGAGG
AAATTGTGGAGGCTGCTAAAGCTGCCAACGTTGACCACTTTATCCGTACCCTGCCTGGCGGTTATAATATGGAAATGAAC
CAGGAATCCAGCAATATTTCCCAAGGTCAGAAACAGCTTTTGACCATTGCACGTGCCTTGTTGGCGGATCCTGCTATTCT
GATTCTTGACGAAGCGACTTCTTCAGTTGATACCCGTTTGGAACTCTTGATTCAAAAGGCCATGAAACGGTTGATGAAAG
GGCGGACAAGTTTCGTCATCGCTCATCGCTTATCTACCATTCAGGAAGCTGATAAGATTTTGGTCTTGAAAGATGGACAG
ATTATCGAACAAGGTAACCATGAAAGTCTTTTGGCAGACAAAGGTTTCTATTATAATCTGTATCAAAGTCAGTTTAGTGA
ATCCAAATAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(21-304)

ABC transporter (ABC_tran)

(366-514)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

43.729

100

0.438