Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   NQZ93_RS04275 Genome accession   NZ_CP102141
Coordinates   880684..882420 (+) Length   578 a.a.
NCBI ID   WP_257115394.1    Uniprot ID   -
Organism   Streptococcus suis strain DNR48     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 875684..887420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ93_RS04250 (NQZ93_04250) - 878240..878995 (+) 756 WP_024381800.1 class I SAM-dependent methyltransferase -
  NQZ93_RS04255 (NQZ93_04255) pcp 878992..879639 (+) 648 WP_024381801.1 pyroglutamyl-peptidase I -
  NQZ93_RS04260 (NQZ93_04260) - 879639..879947 (+) 309 WP_024381802.1 DUF4298 domain-containing protein -
  NQZ93_RS04265 (NQZ93_04265) rpsP 880072..880344 (+) 273 WP_002940682.1 30S ribosomal protein S16 -
  NQZ93_RS04270 (NQZ93_04270) - 880366..880608 (+) 243 WP_012028079.1 KH domain-containing protein -
  NQZ93_RS04275 (NQZ93_04275) rcrP 880684..882420 (+) 1737 WP_257115394.1 ABC transporter ATP-binding protein Regulator
  NQZ93_RS04280 (NQZ93_04280) rcrQ 882429..884198 (+) 1770 WP_024381804.1 ABC transporter ATP-binding protein Regulator
  NQZ93_RS04285 (NQZ93_04285) - 884255..885178 (-) 924 WP_024381805.1 polysaccharide deacetylase family protein -
  NQZ93_RS04290 (NQZ93_04290) - 885283..886569 (+) 1287 WP_024381806.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 65143.62 Da        Isoelectric Point: 6.2102

>NTDB_id=615282 NQZ93_RS04275 WP_257115394.1 880684..882420(+) (rcrP) [Streptococcus suis strain DNR48]
MNLIWTYLKKYPKWIALDFLGASLFVVVNLGLPTFLARMIDQGITKNDVSQLYFWAGMMGLIVLLGIVGRVTLAYAAGKL
TTNIVKDIRNDLYEKIQDYSHHEYEQIGVSSLVARMTNDAFVLMQFSEMVLKLGIITPLMMIASVIMTLVTSPSLAWTVA
VAMPFLVFVIFYVATKTRPLSEKQQKRLDTINQYVRENLMGLRVIRAFTRKEFQEERFESVNEEYTDISKKLFNLTGLTE
PLFVQIIIAMIVAIVWFALDPLKTGSLQIGDLVAFIEYSFHALFSFLLFANLFNMYPRMSVSSQRIQKVLDMPISISKNE
EGITKSDTRGYLEFENVTFAYPGETESPVLHNISFKAKPGETIAFIGSTGSGKSSLVNLIPRFYDVTLGRILVDGVDVRR
YNLKALRSKIGFIPQKALLFTGTIAENLKYGKMDASLAELHDATDVAQAKEFIESKEEKFDTHLAEGGSNLSGGQKQRLS
IARAIVKQPDIYIFDDSFSALDYKTDAILRSRLKEVMENATVLIVAQRVGTIMDADQIIVLNEGEIVGRGTHNELMESNE
IYREIANSQLNRQSLTEE

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=615282 NQZ93_RS04275 WP_257115394.1 880684..882420(+) (rcrP) [Streptococcus suis strain DNR48]
ATGAATCTGATTTGGACCTATTTGAAAAAATATCCTAAGTGGATTGCATTGGACTTTTTGGGAGCCTCCTTATTTGTAGT
GGTAAACTTGGGCTTGCCGACTTTTTTGGCTAGGATGATTGACCAAGGAATTACAAAGAACGATGTTAGTCAGCTCTATT
TCTGGGCGGGGATGATGGGATTAATTGTCCTGCTCGGGATTGTTGGTCGAGTGACACTTGCCTATGCAGCTGGAAAATTG
ACTACCAATATCGTCAAAGATATTCGAAATGATCTGTATGAGAAAATTCAGGACTATTCTCATCATGAATATGAGCAGAT
TGGTGTTTCTTCTCTAGTTGCTCGTATGACAAATGATGCTTTTGTTCTCATGCAATTCTCTGAAATGGTCTTGAAACTAG
GTATTATTACACCCTTGATGATGATTGCTTCTGTCATTATGACCTTGGTAACCAGTCCGAGCTTGGCCTGGACAGTAGCA
GTAGCCATGCCTTTTCTAGTTTTTGTTATTTTCTATGTGGCAACCAAAACTCGTCCTCTTTCTGAAAAGCAACAAAAACG
TTTGGACACGATCAACCAATATGTTCGTGAAAATCTCATGGGCTTGCGTGTCATTCGTGCCTTTACTCGTAAGGAGTTTC
AAGAGGAGCGCTTTGAGTCGGTCAATGAGGAATATACCGATATTTCCAAAAAGCTCTTTAATCTGACTGGATTGACAGAG
CCTCTCTTTGTCCAGATTATCATTGCTATGATTGTGGCCATTGTCTGGTTTGCTTTGGATCCCTTGAAAACAGGCAGTCT
ACAAATCGGTGATTTAGTAGCCTTTATCGAATATAGTTTCCACGCGCTTTTCTCTTTCTTGCTCTTTGCTAACTTGTTTA
ACATGTATCCACGTATGTCGGTATCGAGCCAACGAATTCAGAAAGTCTTGGACATGCCCATTTCCATTTCTAAGAATGAA
GAAGGTATTACTAAATCAGATACTCGTGGTTATTTGGAATTTGAAAATGTAACTTTTGCCTATCCTGGTGAAACGGAATC
GCCTGTTCTCCACAATATTTCATTTAAGGCTAAGCCTGGTGAAACGATTGCCTTTATTGGTTCAACAGGTTCTGGTAAGT
CTTCCTTGGTCAACTTGATTCCACGTTTCTATGATGTGACACTTGGTCGTATCTTGGTGGATGGTGTGGATGTCAGACGC
TACAATCTGAAGGCACTCCGCAGCAAGATTGGCTTTATTCCACAGAAAGCTCTGCTATTTACCGGAACTATCGCGGAAAA
CTTAAAGTACGGTAAGATGGATGCTAGTCTTGCTGAACTTCATGATGCGACAGATGTGGCTCAGGCTAAGGAGTTTATCG
AGAGTAAGGAAGAAAAATTCGACACCCACTTGGCTGAGGGCGGAAGCAACCTGTCAGGCGGGCAAAAGCAACGTTTGTCC
ATTGCACGTGCTATTGTCAAGCAGCCGGATATTTACATTTTTGATGATTCTTTCTCAGCCTTGGATTATAAGACGGATGC
GATTTTGAGGAGTCGTTTGAAGGAAGTGATGGAAAATGCGACGGTGCTAATTGTGGCTCAACGTGTCGGAACCATTATGG
ATGCTGACCAGATTATCGTGCTGAACGAAGGTGAAATCGTTGGCCGCGGCACCCACAATGAATTGATGGAAAGCAATGAG
ATTTACCGAGAAATTGCCAACTCTCAACTTAACCGTCAATCGTTAACAGAAGAATAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(27-280)

ABC transporter (ABC_tran)

(350-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

38.265

100

0.389