Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   NQZ93_RS02030 Genome accession   NZ_CP102141
Coordinates   402952..403569 (-) Length   205 a.a.
NCBI ID   WP_004194173.1    Uniprot ID   A0A0H3N278
Organism   Streptococcus suis strain DNR48     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 397952..408569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ93_RS02010 (NQZ93_02010) - 398787..399620 (+) 834 WP_024381722.1 energy-coupling factor transporter transmembrane protein EcfT -
  NQZ93_RS02015 (NQZ93_02015) - 399780..399983 (+) 204 WP_014637517.1 cold-shock protein -
  NQZ93_RS02020 (NQZ93_02020) rsmG 400025..400738 (-) 714 WP_024381721.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  NQZ93_RS02025 (NQZ93_02025) pbp1a 400797..402971 (-) 2175 WP_024381720.1 penicillin-binding protein PBP1A -
  NQZ93_RS02030 (NQZ93_02030) recU 402952..403569 (-) 618 WP_004194173.1 Holliday junction resolvase RecU Machinery gene
  NQZ93_RS02035 (NQZ93_02035) - 403635..404174 (+) 540 WP_004194171.1 DUF1273 domain-containing protein -
  NQZ93_RS02040 (NQZ93_02040) gpsB 404244..404579 (+) 336 WP_004194167.1 cell division regulator GpsB -
  NQZ93_RS02050 (NQZ93_02050) - 405136..406302 (+) 1167 WP_024381719.1 class I SAM-dependent RNA methyltransferase -
  NQZ93_RS02055 (NQZ93_02055) - 406312..407766 (+) 1455 WP_024381718.1 cell division site-positioning protein MapZ family protein -
  NQZ93_RS02060 (NQZ93_02060) - 407986..408468 (-) 483 WP_004194159.1 S-ribosylhomocysteine lyase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23805.40 Da        Isoelectric Point: 9.9440

>NTDB_id=615262 NQZ93_RS02030 WP_004194173.1 402952..403569(-) (recU) [Streptococcus suis strain DNR48]
MVNYPHKVSKKINRTSPISSQRVNFANRGMSFEAAINDSNQYYLAHDIAVIHKKPTPVQIVKVDYPKRSRAKIVEAYFRQ
ASTTDYSGVFKRHYIDFEAKETRQKASMPMKNFHAHQIEHMKQVVKQGGICFVLLHFSTLKETYLLPATHLIEFYQVDMG
SKSMPLTFIRQYGFEIQMGRFPSIPYLEIVEKNLLGGESFENYNN

Nucleotide


Download         Length: 618 bp        

>NTDB_id=615262 NQZ93_RS02030 WP_004194173.1 402952..403569(-) (recU) [Streptococcus suis strain DNR48]
ATGGTCAATTATCCTCATAAGGTGTCAAAAAAAATCAATAGAACCAGTCCTATTTCATCCCAGCGAGTAAACTTTGCTAA
TCGCGGAATGTCTTTTGAGGCCGCTATCAACGATAGCAATCAATATTACCTTGCGCACGATATTGCTGTCATTCACAAGA
AGCCAACTCCCGTGCAAATTGTAAAAGTTGATTACCCCAAACGGAGCCGTGCTAAGATTGTCGAAGCATACTTTCGACAG
GCATCTACCACAGACTACTCTGGTGTTTTTAAAAGACATTATATTGATTTTGAAGCGAAAGAGACACGCCAAAAAGCATC
CATGCCCATGAAAAATTTTCATGCGCATCAGATTGAACACATGAAACAGGTTGTTAAACAAGGTGGTATTTGTTTTGTCC
TTCTTCACTTTTCAACATTAAAAGAAACCTATCTCTTGCCAGCCACTCATTTGATCGAATTTTATCAAGTAGACATGGGT
AGTAAGTCGATGCCTCTAACCTTTATTCGACAATACGGCTTTGAGATTCAAATGGGGCGTTTCCCCAGCATCCCATATCT
GGAAATCGTTGAAAAAAATCTATTAGGTGGTGAATCTTTTGAAAACTACAACAATTAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(28-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3N278

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

48.744

97.073

0.473