Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   SII_RS04800 Genome accession   NC_022237
Coordinates   958518..959321 (-) Length   267 a.a.
NCBI ID   WP_003075634.1    Uniprot ID   A0AAD1FJP4
Organism   Streptococcus intermedius C270     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 953518..964321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SII_RS04785 (SII_0942) smc 953539..957072 (-) 3534 WP_020998734.1 chromosome segregation protein SMC -
  SII_RS04790 (SII_0943) rnc 957063..957761 (-) 699 WP_003072976.1 ribonuclease III -
  SII_RS04795 (SII_0944) - 958150..958509 (-) 360 WP_003072977.1 YbaN family protein -
  SII_RS04800 (SII_0945) vicX 958518..959321 (-) 804 WP_003075634.1 MBL fold metallo-hydrolase Regulator
  SII_RS04805 (SII_0946) micB 959323..960675 (-) 1353 WP_003072979.1 cell wall metabolism sensor histidine kinase VicK Regulator
  SII_RS04810 (SII_0947) micA 960668..961369 (-) 702 WP_003072980.1 response regulator YycF Regulator
  SII_RS04815 (SII_0948) - 961667..962008 (-) 342 WP_020998735.1 hypothetical protein -
  SII_RS04820 (SII_0949) - 962035..963348 (-) 1314 WP_020998736.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29893.80 Da        Isoelectric Point: 6.0341

>NTDB_id=61523 SII_RS04800 WP_003075634.1 958518..959321(-) (vicX) [Streptococcus intermedius C270]
MNEKGFKYSILASGSTGNCFYLETPKRKLLIDAGLSGKKITSLLSEIDRKPEDLDAILVTHEHKDHIHGVGVLARKYHLD
IYANQDTWNAMETALGKIDVSQKHIFEMGKTKTFGDIDIESFGVSHDAVAPQFYRLMKDDKSFVLLTDTGYVSDRMAGII
ENADGYLIESNHDIEILRSGAYPWSLKQRILSDQGHLSNDDGAETMIRTLGIRTKKIYLGHLSKENNTKELAHITMVNQL
AQADLAVEHDFHVYDTSPDTATPLTNI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=61523 SII_RS04800 WP_003075634.1 958518..959321(-) (vicX) [Streptococcus intermedius C270]
ATGAACGAGAAAGGATTTAAGTACAGTATTTTAGCGTCGGGTTCTACTGGTAATTGTTTCTATTTAGAAACCCCGAAGAG
AAAGTTGTTGATTGATGCAGGTTTATCCGGAAAGAAAATTACTAGTTTGTTGAGCGAAATTGATCGTAAGCCAGAGGATT
TGGATGCTATTTTGGTGACGCATGAACATAAAGACCATATTCATGGTGTGGGTGTTTTAGCACGGAAATATCATTTAGAT
ATTTATGCTAATCAAGATACTTGGAATGCCATGGAAACAGCGCTTGGAAAGATTGATGTCAGTCAGAAGCATATTTTTGA
AATGGGAAAAACGAAAACATTTGGTGATATTGATATTGAAAGTTTTGGGGTCAGTCATGATGCGGTTGCACCACAATTCT
ATCGATTGATGAAAGATGACAAAAGTTTTGTTTTGCTGACGGACACTGGTTATGTCAGCGATCGGATGGCAGGAATCATT
GAAAATGCAGATGGCTATTTGATTGAATCAAATCATGATATTGAAATCCTGCGCAGTGGTGCTTATCCTTGGAGTTTAAA
GCAGCGGATTTTGTCTGATCAAGGGCATTTGTCGAATGATGATGGTGCTGAAACTATGATTCGCACTCTTGGGATTCGGA
CAAAGAAAATCTATCTAGGACATCTCAGCAAGGAAAATAATACTAAAGAATTGGCTCATATTACAATGGTCAATCAATTG
GCACAAGCTGACTTGGCAGTGGAGCATGATTTTCATGTGTATGATACCTCACCAGATACGGCGACACCTTTAACCAATAT
TTAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

81.273

100

0.813

Multiple sequence alignment