Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   LIO31_RS04990 Genome accession   NZ_CP085086
Coordinates   984661..985887 (+) Length   408 a.a.
NCBI ID   WP_002934974.1    Uniprot ID   G7SE29
Organism   Streptococcus suis strain Ssuis_MA6     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 979661..990887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIO31_RS04960 - 980612..980947 (+) 336 WP_002934966.1 hypothetical protein -
  LIO31_RS04965 - 981043..982002 (+) 960 WP_023370402.1 ROK family glucokinase -
  LIO31_RS04970 - 982129..982407 (+) 279 WP_012775087.1 hypothetical protein -
  LIO31_RS04975 - 982419..982721 (+) 303 WP_024383529.1 hypothetical protein -
  LIO31_RS04980 - 982774..983613 (+) 840 WP_014637954.1 thymidylate synthase -
  LIO31_RS04985 - 983951..984463 (+) 513 WP_024405715.1 dihydrofolate reductase -
  LIO31_RS04990 clpX 984661..985887 (+) 1227 WP_002934974.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  LIO31_RS04995 yihA 985942..986529 (+) 588 WP_014638915.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  LIO31_RS05000 ndk 986552..986965 (+) 414 WP_024405714.1 nucleoside-diphosphate kinase -
  LIO31_RS05005 lepA 987061..988893 (+) 1833 WP_024405713.1 translation elongation factor 4 -
  LIO31_RS05010 - 988947..989234 (+) 288 WP_024405712.1 hypothetical protein -
  LIO31_RS10400 - 989465..989563 (+) 99 Protein_952 IS3 family transposase -
  LIO31_RS05015 - 989651..989833 (-) 183 WP_002934978.1 4-oxalocrotonate tautomerase -
  LIO31_RS05020 - 989956..990180 (+) 225 WP_024405711.1 hypothetical protein -
  LIO31_RS05025 - 990279..990860 (+) 582 WP_002934983.1 thymidine kinase -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45318.84 Da        Isoelectric Point: 4.6382

>NTDB_id=615219 LIO31_RS04990 WP_002934974.1 984661..985887(+) (clpX) [Streptococcus suis strain Ssuis_MA6]
MAVKHTHELIYCSFCGKNQEEVKKIIAGNNVFICNECVELAQEIIREELAEEVLTDLADTPKPQELLNILNNYVIGQDRA
KRALAVAVYNHYKRINFQDSRDENDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENIL
LKLLQAADFNIDRAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIHVDTKN
ILFIVGGAFDGIEEIVKQRLGEKIIGFGHNNRAIDEKESYMQHIIADDIQKFGIIPELIGRLPVFAALDQLTTEDLVRIL
TEPKNALVKQYQTLLSYDDVELDFDEDALLAIAEKAIERKTGARGLRSIIEETMLDVMFEVPGQDNVKRVRVTKAAVDGK
EKPLLETA

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=615219 LIO31_RS04990 WP_002934974.1 984661..985887(+) (clpX) [Streptococcus suis strain Ssuis_MA6]
ATGGCAGTTAAGCATACACATGAGCTAATCTATTGCTCATTTTGCGGAAAAAATCAAGAAGAAGTTAAAAAAATTATCGC
AGGGAACAATGTCTTCATTTGTAATGAGTGCGTGGAACTAGCACAGGAAATCATTCGTGAGGAACTGGCAGAAGAAGTTT
TGACAGACTTGGCCGATACACCAAAGCCACAAGAATTACTCAATATCCTGAACAACTACGTCATCGGACAGGATCGTGCA
AAACGTGCTTTAGCAGTAGCCGTTTACAACCACTATAAACGTATCAATTTCCAAGATAGCCGTGATGAGAACGATGTTGA
TTTGCAAAAATCAAATATCCTTATGATTGGCCCGACTGGTTCAGGAAAAACCTTCCTAGCTCAGACCTTGGCTAAAAGTT
TGAATGTCCCTTTTGCTATTGCCGATGCGACCGCTCTTACTGAGGCGGGTTATGTTGGTGAAGACGTAGAAAATATCCTC
CTCAAACTTTTGCAGGCTGCAGACTTTAACATCGACCGTGCAGAAAGAGGAATTATCTATGTGGATGAAATTGATAAAAT
TGCCAAAAAAGGTGAAAATGTGTCCATTACCCGCGATGTATCTGGTGAAGGTGTCCAGCAAGCTCTCCTAAAAATTATCG
AGGGAACTGTGGCCAGCGTACCACCACAAGGTGGACGCAAACATCCAAACCAAGAAATGATTCACGTGGACACCAAAAAT
ATCCTGTTTATCGTTGGCGGTGCATTTGATGGTATCGAAGAAATCGTCAAGCAGCGTCTCGGTGAAAAAATCATCGGTTT
TGGTCATAATAATCGTGCTATTGATGAAAAAGAATCATACATGCAACATATCATTGCAGACGATATTCAAAAATTCGGTA
TCATTCCAGAGTTGATTGGTCGCTTGCCTGTATTCGCAGCTTTGGACCAATTGACAACAGAGGATTTGGTACGCATTTTG
ACGGAACCGAAGAATGCTCTTGTAAAACAATACCAGACACTCTTGTCTTATGATGACGTGGAGCTTGACTTTGATGAGGA
CGCCTTGTTAGCAATTGCAGAAAAAGCAATTGAACGTAAAACTGGTGCTCGTGGACTTCGCTCCATCATTGAAGAAACGA
TGTTGGATGTCATGTTTGAGGTGCCAGGTCAAGATAACGTTAAACGCGTTCGTGTAACCAAAGCAGCAGTAGACGGTAAG
GAAAAGCCTTTACTAGAAACTGCATAA

Domains

Predicted by InterproScan.

ClpX C4-type zinc finger (zf-C4_ClpX)

(11-47)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(311-389)

AAA domain (Cdc48 subfamily) (AAA_2)

(109-304)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G7SE29

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

83.13

100

0.833
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.209

98.529

0.574