Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   LIO31_RS02140 Genome accession   NZ_CP085086
Coordinates   415723..416772 (+) Length   349 a.a.
NCBI ID   WP_012775295.1    Uniprot ID   A0A2K1T047
Organism   Streptococcus suis strain Ssuis_MA6     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 410723..421772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIO31_RS02105 - 411025..412119 (+) 1095 WP_171840758.1 sensor histidine kinase -
  LIO31_RS02110 - 412116..412718 (+) 603 WP_024405571.1 response regulator transcription factor -
  LIO31_RS02115 - 413026..413244 (+) 219 WP_024405570.1 YqgQ family protein -
  LIO31_RS02120 - 413244..413630 (+) 387 WP_004194735.1 rhodanese-like domain-containing protein -
  LIO31_RS02125 - 413687..414409 (+) 723 WP_024405569.1 hypothetical protein -
  LIO31_RS02130 rsmD 414719..415258 (+) 540 WP_014638485.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  LIO31_RS02135 coaD 415248..415736 (+) 489 WP_002939048.1 pantetheine-phosphate adenylyltransferase -
  LIO31_RS02140 sepM 415723..416772 (+) 1050 WP_012775295.1 SepM family pheromone-processing serine protease Regulator
  LIO31_RS02145 - 416960..417601 (+) 642 WP_024382386.1 YutD-like domain-containing protein -
  LIO31_RS02150 rlmN 417610..418722 (+) 1113 WP_012028433.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  LIO31_RS02155 - 418719..419246 (+) 528 WP_012027591.1 VanZ family protein -
  LIO31_RS02160 nadE 420542..421366 (-) 825 WP_004194617.1 ammonia-dependent NAD(+) synthetase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37761.83 Da        Isoelectric Point: 4.6112

>NTDB_id=615213 LIO31_RS02140 WP_012775295.1 415723..416772(+) (sepM) [Streptococcus suis strain Ssuis_MA6]
MKKNRKLTLIASIVLGTLLIWFAVFVRLPYYLESPGGAADIRQVLTVNNQIDQEDGSYNFTYVSVQQATALQLFAAQFDP
YTTVRSSEEMTGGADNEEYFRIARFYMETSQNMAKYQGLTLAGKEVNLDFFGVYVLALTDDSTFKKVLNIADTVVSINGK
TFESSPDLIKYVSGLEVGSDVTVGYISAGQEKSADGKIIKLSNGKNGIGITLVDHTEVQSSIPIDFQTGDIGGPSAGLMF
TLAIYTQLAEPDLRDGRIIAGTGTIEQDGKVGDIGGADKKVISAAKSGASIFFVPNNPVDVEVLKKNPKAKTNYEEAKEA
AEKAGLDIEVVPVKTVQEAIDYLKKTKGE

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=615213 LIO31_RS02140 WP_012775295.1 415723..416772(+) (sepM) [Streptococcus suis strain Ssuis_MA6]
ATGAAGAAAAATAGGAAGTTAACCTTAATTGCATCTATTGTTTTAGGAACTCTTTTGATTTGGTTTGCCGTTTTTGTTCG
TCTGCCTTATTATCTGGAAAGTCCAGGTGGAGCTGCCGATATTCGTCAGGTACTAACGGTGAACAATCAAATAGACCAAG
AGGATGGCTCTTACAACTTCACCTATGTATCAGTCCAACAGGCTACAGCTTTACAACTATTCGCTGCTCAGTTTGATCCC
TATACGACAGTTCGTTCCTCTGAAGAGATGACAGGAGGGGCCGACAATGAGGAGTATTTCCGTATAGCACGGTTTTACAT
GGAGACATCGCAAAATATGGCGAAGTACCAAGGTTTGACCTTGGCAGGAAAAGAAGTCAATCTTGATTTCTTTGGTGTCT
ATGTGCTTGCCTTGACGGATGATTCAACCTTTAAAAAAGTTCTTAATATTGCCGACACTGTTGTGAGTATCAATGGAAAA
ACATTTGAGTCTTCTCCTGATTTGATTAAATATGTGAGTGGCTTGGAGGTTGGAAGTGATGTAACAGTTGGCTATATTAG
CGCTGGTCAGGAAAAATCTGCGGACGGTAAGATTATCAAATTGTCTAATGGCAAAAACGGGATAGGTATCACTCTCGTAG
ATCATACAGAGGTTCAAAGTTCGATTCCGATTGATTTCCAAACAGGAGATATTGGTGGTCCAAGTGCTGGTCTGATGTTT
ACACTTGCCATCTATACTCAACTCGCAGAGCCTGACTTACGTGATGGTCGGATTATTGCTGGTACGGGGACTATCGAGCA
GGATGGAAAAGTAGGTGACATTGGTGGGGCTGATAAGAAGGTCATTTCGGCAGCTAAGTCTGGTGCAAGTATCTTTTTTG
TACCAAACAATCCAGTTGATGTAGAAGTTTTGAAGAAAAATCCAAAGGCTAAAACGAACTATGAAGAAGCTAAGGAAGCA
GCCGAGAAAGCAGGTCTAGATATTGAGGTAGTTCCTGTGAAAACTGTTCAAGAGGCTATTGATTATTTGAAGAAAACAAA
GGGCGAGTAA

Domains

Predicted by InterproScan.

PDZ domain (PDZ_2)

(132-195)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(232-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2K1T047

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

60.807

99.427

0.605