Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   LIO34_RS09070 Genome accession   NZ_CP085085
Coordinates   1818049..1818783 (-) Length   244 a.a.
NCBI ID   WP_002939204.1    Uniprot ID   A0A0K2E869
Organism   Streptococcus suis strain Ssuis_MA8     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1813049..1823783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIO34_RS09040 rnpM 1813277..1813573 (-) 297 WP_002942375.1 RNase P modulator RnpM -
  LIO34_RS09045 nusA 1813590..1814732 (-) 1143 WP_004194726.1 transcription termination factor NusA -
  LIO34_RS09050 rimP 1814805..1815275 (-) 471 WP_002942369.1 ribosome maturation factor RimP -
  LIO34_RS09055 trmB 1815533..1816171 (-) 639 WP_002939002.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  LIO34_RS09060 ccrZ 1816168..1816962 (-) 795 WP_013730554.1 cell cycle regulator CcrZ -
  LIO34_RS09065 - 1817012..1818052 (-) 1041 WP_013730555.1 ABC transporter permease -
  LIO34_RS09070 pptA 1818049..1818783 (-) 735 WP_002939204.1 ABC transporter ATP-binding protein Regulator
  LIO34_RS09075 - 1818846..1819259 (+) 414 WP_002939203.1 HIT family protein -
  LIO34_RS09080 - 1819261..1819563 (+) 303 WP_002939199.1 hypothetical protein -
  LIO34_RS09085 - 1819672..1820865 (-) 1194 WP_002939198.1 LCP family protein -
  LIO34_RS09090 - 1820862..1821389 (-) 528 WP_002939196.1 GNAT family N-acetyltransferase -
  LIO34_RS09095 tsaE 1821382..1821822 (-) 441 WP_024376437.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  LIO34_RS09100 - 1821923..1823587 (-) 1665 WP_002939193.1 DAK2 domain-containing protein -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26760.04 Da        Isoelectric Point: 4.3999

>NTDB_id=615185 LIO34_RS09070 WP_002939204.1 1818049..1818783(-) (pptA) [Streptococcus suis strain Ssuis_MA8]
MLEVKNVTGGYVNIPVLKDVSFTVEDGQLVGLIGLNGAGKSTTIKEIIGLLTPYQGQIAIDGLTLLQGAENYRKKIGFIP
ETPSLYEELTLKEHLEVVAMAYDLSWEQAWGRVEHLLKLFRLDEKLDWFPVNFSKGMKQKVMIICAFMVEPSLLIVDEPF
LGLDPVAISDLIALLGEEKSKGTSILMSTHVLDSAEKMCDSFVILHQGQVRATGNLEELQSAFGMDGASLNEIYLALTQE
GVAG

Nucleotide


Download         Length: 735 bp        

>NTDB_id=615185 LIO34_RS09070 WP_002939204.1 1818049..1818783(-) (pptA) [Streptococcus suis strain Ssuis_MA8]
ATGTTAGAAGTAAAAAATGTAACTGGAGGATATGTCAATATCCCAGTTTTGAAAGATGTATCTTTTACCGTTGAGGATGG
TCAATTAGTTGGTCTAATTGGTTTAAATGGTGCAGGGAAATCAACGACTATTAAGGAAATTATCGGTCTTTTGACCCCCT
ATCAAGGACAGATTGCAATTGACGGCCTAACTTTGCTACAAGGGGCTGAAAATTATCGGAAGAAGATTGGGTTTATCCCT
GAAACACCAAGTTTGTATGAAGAACTAACCCTCAAAGAGCACTTGGAAGTGGTAGCAATGGCCTATGATTTATCCTGGGA
GCAAGCTTGGGGACGTGTTGAGCACTTGTTAAAACTGTTTCGCTTGGATGAGAAATTGGACTGGTTTCCTGTCAATTTTT
CAAAGGGAATGAAGCAGAAGGTCATGATTATTTGTGCTTTTATGGTGGAGCCGAGTCTATTGATTGTTGATGAGCCTTTT
CTGGGATTAGACCCTGTGGCTATCTCTGATTTAATCGCTCTTTTGGGGGAAGAAAAATCTAAGGGCACTTCAATCCTCAT
GTCCACTCACGTTCTTGACTCAGCTGAGAAAATGTGCGACTCTTTTGTGATTTTACATCAGGGACAGGTCCGTGCAACTG
GAAATTTGGAGGAGCTACAAAGCGCATTTGGTATGGATGGTGCAAGTCTGAATGAAATTTATCTGGCCTTGACGCAAGAA
GGAGTGGCTGGATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0K2E869

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

75.314

97.951

0.738
  pptA Streptococcus thermophilus LMD-9

73.64

97.951

0.721