Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   NQZ94_RS04795 Genome accession   NZ_CP102140
Coordinates   936246..937982 (+) Length   578 a.a.
NCBI ID   WP_257116275.1    Uniprot ID   -
Organism   Streptococcus suis strain DNC49     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 931246..942982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ94_RS04770 (NQZ94_04770) - 933802..934557 (+) 756 WP_013730347.1 class I SAM-dependent methyltransferase -
  NQZ94_RS04775 (NQZ94_04775) pcp 934554..935201 (+) 648 WP_013730348.1 pyroglutamyl-peptidase I -
  NQZ94_RS04780 (NQZ94_04780) - 935201..935509 (+) 309 WP_013730349.1 DUF4298 domain-containing protein -
  NQZ94_RS04785 (NQZ94_04785) rpsP 935634..935906 (+) 273 WP_002940682.1 30S ribosomal protein S16 -
  NQZ94_RS04790 (NQZ94_04790) - 935928..936170 (+) 243 WP_012028079.1 KH domain-containing protein -
  NQZ94_RS04795 (NQZ94_04795) rcrP 936246..937982 (+) 1737 WP_257116275.1 ABC transporter ATP-binding protein Regulator
  NQZ94_RS04800 (NQZ94_04800) rcrQ 937991..939760 (+) 1770 WP_002938582.1 ABC transporter ATP-binding protein Regulator
  NQZ94_RS04805 (NQZ94_04805) - 939804..940727 (-) 924 WP_002938584.1 polysaccharide deacetylase family protein -
  NQZ94_RS04810 (NQZ94_04810) - 940833..942119 (+) 1287 WP_002938586.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 65077.48 Da        Isoelectric Point: 5.9944

>NTDB_id=615184 NQZ94_RS04795 WP_257116275.1 936246..937982(+) (rcrP) [Streptococcus suis strain DNC49]
MNLIWTYLKKYPKWIALDLLGAFLFVVVNLGLPTFLARVIDQGITKNDVSQLYFWAGMMGLIVLLGIVGRVTLAYAAGKL
TTNIVKDIRNDLYEKIQDYSHHEYEQIGVSSLVARMTNDAFVLMQFSEMVLKLGIITPLMMIASVIMTLVTSPSLAWTVA
VAMPFLVFVIFYVATKTRPLSEKQQKRLDTINQYVRENLMGLRVIRAFTREEFQENRFAEVNEEYTDISKKLFNLTGLTE
PLFVQIIIAMIVAIVWFALDPLKTGSLQIGDLVAFIEYSFHALFSFLLFANLFNMYPRMSVSSQRIQKVLDMPISISKNE
EGITKSDTRGYLEFENVTFAYPGETESPVLHNISFKAKPGETIAFIGSTGSGKSSLVNLIPRFYDVTLGRILVDGVDVRR
YNLKALRSKIGFIPQKALLFTGTIAENLKYGKMDASLAELHDATDVAQAKEFIESKEEKFDTHLAEGGSNLSGGQKQRLS
IARAIVKQPDIYIFDDSFSALDYKTDAILRSRLKEVTENATVLIVAQRVGTIMDADQIIVLNEGEIVGRGTHNELMESNE
IYREIANSQLNRQSLTEE

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=615184 NQZ94_RS04795 WP_257116275.1 936246..937982(+) (rcrP) [Streptococcus suis strain DNC49]
ATGAATCTGATTTGGACCTATTTGAAAAAATATCCTAAGTGGATTGCCTTAGACTTGTTGGGGGCCTTCTTATTTGTAGT
GGTAAACTTAGGCTTGCCGACTTTTTTGGCTAGGGTGATTGACCAAGGAATTACAAAGAACGATGTTAGTCAGCTCTATT
TCTGGGCGGGGATGATGGGATTGATTGTCCTGCTCGGGATTGTTGGTCGAGTGACACTTGCCTATGCAGCTGGAAAATTG
ACTACCAATATCGTCAAAGATATTCGAAATGATCTGTATGAGAAAATTCAGGACTATTCTCATCATGAATATGAGCAGAT
TGGTGTTTCTTCTCTAGTTGCTCGTATGACAAATGATGCTTTTGTTCTCATGCAATTCTCTGAAATGGTCTTGAAACTAG
GTATTATTACACCCTTGATGATGATTGCTTCTGTCATTATGACCTTGGTAACCAGTCCGAGCTTGGCTTGGACAGTAGCA
GTAGCCATGCCGTTTCTAGTTTTTGTTATTTTCTATGTGGCAACAAAAACTCGTCCTCTCTCTGAAAAACAACAGAAACG
ATTGGATACTATCAACCAGTATGTTCGTGAAAATCTCATGGGTTTGCGGGTCATTCGTGCCTTTACACGTGAAGAGTTCC
AAGAAAATCGTTTTGCAGAGGTCAATGAGGAATATACCGATATTTCCAAAAAGCTCTTTAATCTGACTGGATTGACAGAG
CCTCTCTTTGTCCAGATTATCATTGCTATGATTGTGGCCATTGTCTGGTTTGCTTTGGATCCCTTGAAAACAGGCAGTCT
ACAAATCGGTGATTTAGTAGCCTTTATCGAATATAGTTTCCACGCGCTTTTCTCTTTCTTGCTCTTTGCTAACTTGTTTA
ACATGTATCCACGTATGTCGGTATCGAGCCAACGAATTCAGAAAGTCTTGGACATGCCCATTTCCATTTCTAAGAATGAA
GAAGGTATTACTAAATCAGATACTCGTGGTTATTTGGAATTTGAAAATGTAACTTTTGCCTATCCTGGTGAAACGGAATC
GCCTGTTCTCCACAATATTTCATTTAAGGCTAAGCCTGGTGAAACGATTGCCTTTATTGGTTCAACAGGTTCTGGTAAGT
CTTCCTTGGTCAACTTGATTCCACGTTTCTATGATGTGACACTTGGTCGTATCTTGGTGGATGGTGTGGATGTCAGACGC
TACAATCTGAAGGCACTCCGCAGCAAGATTGGCTTTATTCCACAGAAAGCTCTGCTATTTACCGGAACTATCGCGGAAAA
CTTAAAGTACGGTAAGATGGATGCTAGTCTTGCTGAACTTCATGATGCGACAGATGTGGCTCAGGCTAAGGAGTTTATCG
AGAGTAAGGAAGAAAAATTCGACACCCACTTGGCTGAGGGCGGAAGCAACCTGTCAGGCGGGCAAAAGCAACGTTTGTCC
ATTGCACGTGCTATTGTCAAGCAGCCGGATATTTACATTTTTGATGATTCTTTCTCAGCCTTGGATTATAAGACGGATGC
AATTTTGCGGAGTCGTTTGAAGGAAGTGACGGAAAATGCGACGGTGCTAATTGTGGCTCAACGTGTCGGAACCATTATGG
ATGCTGACCAGATTATCGTGCTGAACGAAGGTGAAATCGTTGGCCGCGGCACCCACAATGAATTGATGGAAAGCAATGAG
ATTTACCGAGAAATTGCCAACTCTCAACTTAACCGTCAATCGTTAACAGAAGAATAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(350-497)

ABC transporter transmembrane region (ABC_membrane)

(20-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

38.333

100

0.398