Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   LIO34_RS08420 Genome accession   NZ_CP085085
Coordinates   1680212..1680901 (-) Length   229 a.a.
NCBI ID   WP_002942700.1    Uniprot ID   A0A126UNE5
Organism   Streptococcus suis strain Ssuis_MA8     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1675212..1685901
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIO34_RS08395 - 1675682..1676395 (-) 714 WP_009910601.1 NADPH-dependent oxidoreductase -
  LIO34_RS08400 dnaI 1676392..1677291 (-) 900 WP_002938337.1 primosomal protein DnaI -
  LIO34_RS08405 - 1677291..1678442 (-) 1152 WP_009910602.1 replication initiation and membrane attachment protein -
  LIO34_RS08410 nrdR 1678429..1678920 (-) 492 WP_002938341.1 transcriptional regulator NrdR -
  LIO34_RS08415 - 1678992..1680122 (-) 1131 WP_013730514.1 AI-2E family transporter -
  LIO34_RS08420 covR 1680212..1680901 (-) 690 WP_002942700.1 DNA-binding response regulator Regulator
  LIO34_RS08425 gndA 1680983..1682410 (-) 1428 WP_002942698.1 NADP-dependent phosphogluconate dehydrogenase -
  LIO34_RS08430 - 1682507..1683046 (-) 540 WP_013730515.1 DUF177 domain-containing protein -
  LIO34_RS08435 trxB 1683056..1683973 (-) 918 WP_002942687.1 thioredoxin-disulfide reductase -
  LIO34_RS08440 - 1683987..1684211 (-) 225 WP_002936682.1 DUF4059 family protein -
  LIO34_RS08445 - 1684229..1685572 (-) 1344 WP_002936685.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26225.11 Da        Isoelectric Point: 5.3968

>NTDB_id=615183 LIO34_RS08420 WP_002942700.1 1680212..1680901(-) (covR) [Streptococcus suis strain Ssuis_MA8]
MAKKILIAGKERNLSHFVSMELQKKDYLVDYASTGKEAMSLAHETDFDLILMSFQLSDMSSKELAAELLAIKPATVMIVV
VEPTEVSQYGEEVLSYAVSYVVKPFVISDLVEQISAIFRGRDFIDNNCKQVHMHAAYRDLKVDFQNRTVTRGDELINLTR
REYDLLATLMNSPEPVSREQLLERVWKYEAASETNVVDVYIRYLRGKLDLPHQDSYIKTVRGVGYAMRD

Nucleotide


Download         Length: 690 bp        

>NTDB_id=615183 LIO34_RS08420 WP_002942700.1 1680212..1680901(-) (covR) [Streptococcus suis strain Ssuis_MA8]
ATGGCTAAGAAAATTTTGATTGCTGGTAAAGAACGCAATCTCTCGCATTTTGTTTCCATGGAATTGCAGAAAAAAGACTA
TCTTGTTGATTATGCATCGACAGGGAAAGAGGCTATGTCCTTGGCACATGAAACGGATTTTGACTTGATTCTGATGAGTT
TTCAGCTTTCAGACATGTCCAGCAAGGAATTGGCTGCAGAACTATTAGCGATAAAACCAGCCACGGTCATGATTGTGGTA
GTTGAGCCGACAGAAGTTAGTCAATATGGGGAAGAAGTCCTCTCTTATGCTGTTTCCTACGTAGTGAAGCCCTTTGTCAT
CAGTGATTTAGTGGAGCAAATCTCTGCGATTTTTCGTGGTCGTGATTTTATTGACAATAACTGTAAACAGGTTCACATGC
ATGCGGCCTATCGTGATTTGAAGGTTGATTTTCAAAATCGAACAGTGACTCGAGGTGATGAATTGATTAATTTGACCCGC
CGAGAGTATGATCTGTTGGCGACCTTAATGAATAGCCCAGAGCCTGTTAGTCGAGAACAACTTCTTGAGCGTGTTTGGAA
ATATGAAGCGGCTTCTGAGACCAATGTCGTCGATGTATATATTCGCTATCTACGTGGTAAACTGGATTTGCCACATCAAG
ATTCATATATAAAAACAGTTCGTGGTGTCGGATATGCCATGCGCGATTGA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-227)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A126UNE5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

47.619

100

0.48
  covR Lactococcus lactis subsp. lactis strain DGCC12653

41.949

100

0.432