Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   LF296_RS17545 Genome accession   NZ_CP085083
Coordinates   3740222..3741373 (+) Length   383 a.a.
NCBI ID   WP_272655059.1    Uniprot ID   -
Organism   Acinetobacter vivianii strain KJ-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3735222..3746373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LF296_RS17525 (LF296_17525) - 3736109..3736870 (+) 762 WP_069579194.1 hypothetical protein -
  LF296_RS17530 (LF296_17530) - 3736918..3739038 (-) 2121 WP_272655057.1 TonB-dependent copper receptor -
  LF296_RS17535 (LF296_17535) - 3739112..3739543 (-) 432 WP_004773211.1 DUF2946 family protein -
  LF296_RS17540 (LF296_17540) def 3739568..3740098 (-) 531 WP_272655058.1 peptide deformylase -
  LF296_RS17545 (LF296_17545) tsaP 3740222..3741373 (+) 1152 WP_272655059.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  LF296_RS17550 (LF296_17550) dprA 3741382..3742512 (+) 1131 WP_272655060.1 DNA-processing protein DprA Machinery gene
  LF296_RS17555 (LF296_17555) - 3742550..3743119 (+) 570 WP_272655061.1 L-threonylcarbamoyladenylate synthase -
  LF296_RS17560 (LF296_17560) - 3743517..3744437 (-) 921 WP_272656238.1 DMT family transporter -
  LF296_RS17565 (LF296_17565) - 3744541..3745194 (-) 654 WP_272655062.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 383 a.a.        Molecular weight: 41862.97 Da        Isoelectric Point: 9.2751

>NTDB_id=615136 LF296_RS17545 WP_272655059.1 3740222..3741373(+) (tsaP) [Acinetobacter vivianii strain KJ-1]
MKKVLNGIPSFHALGLKKQLIAAAICAGLGMSVNFAHAASPNVSPPAVKVGAPHVYVVKKGDTLWDISGKFLKKPWRWPE
IWASNKHVKNPHWIYPGDRLLLCSLNGKPLIGKDEGDGCDGIIRRYTGNTSTLRPQVRVEALNNSVPVIPLTHIQQWLER
TSVLPADAIANTPYILGTADNRVMAGKGQSVYVRGQGLENGQRYGVFREGEPYVVLDQNGKKQNLGIELTQVASGVAIRS
ENDITTVELTDSYNGEVRRGDRVMAEQDAMLPTLFYPTDANQVKDGGKIIRVMGSIGTAAKNGVVTVDRGTVDGVEVGQV
FSIYQDGETVRDPKTKEQVKLPGQYLGSVMIFKSFDRISYAYVLESELPIKLGSDIKPPRLDD

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=615136 LF296_RS17545 WP_272655059.1 3740222..3741373(+) (tsaP) [Acinetobacter vivianii strain KJ-1]
ATGAAAAAGGTTTTAAACGGCATACCATCATTTCATGCCTTGGGGTTAAAAAAACAACTGATTGCAGCTGCAATTTGTGC
AGGATTGGGGATGAGTGTCAATTTTGCGCATGCAGCCAGCCCGAATGTTAGCCCACCTGCGGTGAAAGTAGGTGCTCCGC
ATGTCTATGTGGTGAAAAAAGGCGATACGCTCTGGGATATCTCGGGTAAATTTTTAAAGAAGCCATGGCGCTGGCCTGAA
ATCTGGGCAAGCAATAAACACGTCAAAAATCCACACTGGATTTATCCAGGGGATCGTCTATTACTCTGTAGCCTGAACGG
TAAGCCGTTGATTGGTAAAGATGAAGGTGATGGCTGTGACGGTATTATTCGCCGCTATACAGGCAATACGTCTACCCTGC
GCCCACAAGTTCGTGTTGAAGCACTGAACAATAGCGTGCCTGTTATTCCATTGACACATATTCAGCAATGGTTAGAGCGC
ACTTCTGTGCTGCCAGCAGACGCGATTGCCAATACACCTTATATTCTAGGCACTGCCGATAACCGTGTTATGGCAGGTAA
AGGCCAAAGTGTTTATGTGCGTGGCCAAGGCCTTGAAAATGGCCAGCGCTACGGCGTATTCCGTGAAGGTGAACCCTATG
TAGTACTGGATCAGAATGGTAAAAAACAGAATCTTGGAATTGAACTGACGCAAGTTGCCTCAGGTGTGGCGATTCGTAGT
GAAAATGACATTACTACGGTTGAACTGACTGATAGCTATAATGGTGAAGTACGTCGTGGCGACCGTGTTATGGCTGAACA
AGATGCCATGCTTCCAACTCTGTTCTATCCAACCGACGCCAATCAGGTCAAAGACGGCGGTAAAATTATCCGTGTGATGG
GTTCTATCGGTACAGCCGCAAAAAATGGGGTCGTAACCGTAGATCGTGGAACGGTTGATGGTGTTGAGGTCGGTCAGGTA
TTTAGTATCTATCAAGATGGTGAAACTGTTCGTGACCCAAAAACCAAAGAACAAGTGAAACTACCAGGACAATATTTGGG
TAGTGTCATGATCTTCAAGAGTTTTGACCGTATCAGCTATGCCTATGTACTCGAAAGCGAGTTACCAATTAAGCTTGGCT
CAGATATCAAACCACCACGCCTTGACGATTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(56-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

72.135

100

0.723