Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   LF296_RS17075 Genome accession   NZ_CP085083
Coordinates   3635121..3635447 (-) Length   108 a.a.
NCBI ID   WP_004773997.1    Uniprot ID   N9QBK9
Organism   Acinetobacter vivianii strain KJ-1     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3630121..3640447
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LF296_RS17055 (LF296_17055) - 3630385..3630999 (-) 615 WP_272655015.1 FHA domain-containing protein -
  LF296_RS17060 (LF296_17060) gspD 3631062..3633320 (-) 2259 WP_272655016.1 type II secretion system secretin GspD -
  LF296_RS17065 (LF296_17065) - 3633361..3634200 (-) 840 WP_272655017.1 type II secretion system protein N -
  LF296_RS17070 (LF296_17070) gspN 3634200..3634943 (-) 744 WP_004773999.1 type II secretion system protein N -
  LF296_RS17075 (LF296_17075) hns 3635121..3635447 (-) 327 WP_004773997.1 H-NS family nucleoid-associated regulatory protein Regulator
  LF296_RS17080 (LF296_17080) - 3635836..3636276 (-) 441 WP_272655018.1 acyl-CoA thioesterase -
  LF296_RS17085 (LF296_17085) - 3636285..3637478 (-) 1194 WP_062847098.1 hypothetical protein -
  LF296_RS17090 (LF296_17090) - 3637485..3638312 (-) 828 WP_004773992.1 hypothetical protein -
  LF296_RS17095 (LF296_17095) - 3638309..3639085 (-) 777 WP_272655019.1 uroporphyrinogen-III synthase -
  LF296_RS17100 (LF296_17100) hemC 3639085..3640002 (-) 918 WP_062847136.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12272.95 Da        Isoelectric Point: 5.0441

>NTDB_id=615131 LF296_RS17075 WP_004773997.1 3635121..3635447(-) (hns) [Acinetobacter vivianii strain KJ-1]
MKPDISELSVEDLKRLQAEAEALIASKKDQAIEDAYNQIVAIAEGIGFSVEELLEVGEQKRKKTTRKAVEPRYRNKSNTE
ETWTGRGKQPRWLVAELEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=615131 LF296_RS17075 WP_004773997.1 3635121..3635447(-) (hns) [Acinetobacter vivianii strain KJ-1]
ATGAAACCAGATATTAGCGAATTATCGGTAGAAGATTTAAAGCGTTTACAAGCAGAAGCAGAAGCTTTGATTGCAAGCAA
AAAAGATCAAGCAATTGAGGATGCTTATAATCAAATTGTTGCAATTGCTGAAGGCATTGGCTTTAGCGTTGAAGAGTTGT
TGGAAGTGGGCGAGCAAAAGCGTAAGAAAACAACGCGTAAAGCTGTAGAACCACGCTACCGCAACAAGAGCAATACTGAA
GAAACTTGGACTGGCCGTGGTAAACAACCACGTTGGTTAGTTGCTGAGTTAGAAAAAGGTGCGAAACTTGAAGATTTCTT
GATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(13-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9QBK9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

87.963

100

0.88