Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   LF296_RS16555 Genome accession   NZ_CP085083
Coordinates   3515412..3517637 (+) Length   741 a.a.
NCBI ID   WP_272654978.1    Uniprot ID   A0AAJ6P4Z0
Organism   Acinetobacter vivianii strain KJ-1     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3510412..3522637
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LF296_RS16525 (LF296_16525) lnt 3510456..3512015 (+) 1560 WP_272654977.1 apolipoprotein N-acyltransferase -
  LF296_RS16530 (LF296_16530) - 3512017..3512355 (-) 339 WP_004774166.1 tRNA-binding protein -
  LF296_RS16535 (LF296_16535) - 3512600..3512863 (+) 264 Protein_3226 DUF2798 domain-containing protein -
  LF296_RS16540 (LF296_16540) - 3512926..3513270 (-) 345 WP_069579438.1 hypothetical protein -
  LF296_RS16545 (LF296_16545) gspG 3513532..3513969 (-) 438 WP_032810915.1 type II secretion system major pseudopilin GspG -
  LF296_RS16550 (LF296_16550) gspF 3513993..3515198 (-) 1206 WP_004774159.1 type II secretion system inner membrane protein GspF -
  LF296_RS16555 (LF296_16555) priA 3515412..3517637 (+) 2226 WP_272654978.1 primosomal protein N' Machinery gene
  LF296_RS16560 (LF296_16560) - 3517741..3519558 (+) 1818 WP_272654979.1 cation:proton antiporter -
  LF296_RS16565 (LF296_16565) hslO 3519676..3520551 (+) 876 WP_005255398.1 Hsp33 family molecular chaperone HslO -
  LF296_RS16570 (LF296_16570) - 3520671..3521282 (+) 612 WP_272654980.1 LysE family translocator -
  LF296_RS16575 (LF296_16575) - 3521423..3522367 (+) 945 WP_272654981.1 DnaJ C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 84067.88 Da        Isoelectric Point: 8.6594

>NTDB_id=615127 LF296_RS16555 WP_272654978.1 3515412..3517637(+) (priA) [Acinetobacter vivianii strain KJ-1]
MPTQNSSAIVYRIRVAIPVYLYDTFDYTVSAEQYAQAQVGARVAISFGRQNLVGLITEKVNPDEVFTGQFKLKAITELLD
QEAILDQQVLTLLTWSAQYYQFPIGEVMQSALPALLRQGRALDILFHLWKITPHDDPASLLKRSQKQYEAYQVLKLHPHG
TTENVLNLSGVETSTLKALEKKGLVECCLEPHDFTPTPVQLAQVPLTPNEDQKKAIQQILKAQHHYQAFLLDGLTGSGKT
EVYLQVMHEVLKQGKQVLVLVPEIGLTPQTVSRFKSRFHCDIALLHSGLNDSKRLQAWQHAQTGKASIIIGTRSAIYTPL
PNLGLIILDEEHDLSYKQQEGFRYHTRDVALYRGHLQNCPVILGSATPSIDSYHLVESGKLQLLELNQRAGVAVLPKMHV
VDLKIAKKQHGLSQTLIQQIKHTLERKEQVLIFLNRRGYAPILMCESCGWQANCPHCDAHFTLHSQPYHYLHCHHCGTIN
RLPDHCPECKKQSLKTIGAGTAKLEEHLQELFPHNEVIRVDRDSTSRVGSWQKIYDRIQQNKPSILLGTQMLAKGHHFPH
VTLVAILDIDAGLLSVDPRAPERTAQLIVQVAGRAGRGEHKGSVYLQSLRPDHPMLTTLIEHDYRTVAKQMLADRKIALL
PPYRYAVLVRVESKDRDYSQQFLADIAQQLRTMAGDLVDIWGPIPAPMERKAGRYRAHMVILSTDRAKLHFYLRQWWQQV
VHLPRQHQLRLSIDVDPQEFS

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=615127 LF296_RS16555 WP_272654978.1 3515412..3517637(+) (priA) [Acinetobacter vivianii strain KJ-1]
ATGCCGACCCAAAATTCTAGTGCTATTGTTTACCGTATTCGCGTTGCCATACCTGTATATTTGTATGACACCTTTGATTA
TACGGTCAGTGCAGAGCAATATGCTCAGGCACAAGTCGGTGCGCGTGTTGCCATTTCATTTGGGCGGCAAAATCTGGTGG
GTCTCATCACTGAAAAAGTTAATCCAGATGAAGTGTTTACAGGTCAGTTCAAACTTAAAGCCATCACGGAATTACTCGAT
CAGGAAGCGATTTTAGACCAACAAGTTTTAACTTTGTTGACATGGTCTGCCCAATATTATCAATTTCCGATTGGTGAGGT
CATGCAAAGCGCCTTACCGGCGTTACTCAGACAAGGTCGTGCCTTAGATATCCTGTTCCATCTATGGAAAATTACGCCAC
ACGATGACCCTGCCTCTTTATTAAAACGTTCGCAAAAACAATATGAAGCCTATCAGGTGTTAAAACTGCACCCGCATGGC
ACCACTGAAAATGTCTTGAATCTTAGTGGCGTCGAGACTTCGACCCTGAAAGCACTAGAAAAGAAAGGCCTGGTCGAATG
TTGTCTGGAACCGCATGATTTTACTCCGACACCAGTGCAATTGGCACAAGTTCCGTTAACACCGAATGAAGACCAGAAAA
AAGCTATTCAACAGATTCTCAAGGCACAACATCACTATCAGGCCTTTTTACTGGACGGTTTGACGGGAAGCGGAAAAACA
GAAGTTTATCTGCAAGTGATGCATGAGGTATTAAAACAAGGCAAGCAGGTACTGGTGCTGGTGCCAGAAATTGGCCTGAC
CCCGCAAACCGTTTCACGGTTTAAATCACGCTTTCATTGTGATATTGCCTTGCTCCATTCAGGTCTGAATGACTCGAAAC
GTTTACAGGCATGGCAACATGCGCAAACGGGCAAAGCCTCGATCATTATTGGTACACGCTCTGCGATTTATACCCCATTG
CCAAATCTGGGACTGATCATTTTAGATGAGGAACATGACCTCTCTTATAAGCAGCAAGAAGGTTTCCGTTACCATACCCG
TGATGTCGCCTTATATCGTGGGCATTTGCAAAACTGTCCTGTGATTCTCGGCTCAGCCACCCCCAGCATCGACAGTTATC
ATCTGGTTGAGTCAGGAAAATTACAGCTCCTTGAACTGAATCAGCGTGCAGGCGTGGCCGTTTTACCGAAAATGCATGTG
GTGGATTTAAAGATTGCGAAAAAGCAGCATGGGCTCAGCCAGACCTTGATTCAGCAAATTAAGCATACGTTAGAGCGCAA
AGAGCAAGTGCTGATCTTTTTAAACCGACGCGGCTATGCACCCATTCTTATGTGTGAAAGTTGCGGCTGGCAAGCCAACT
GTCCGCACTGTGATGCGCACTTTACCCTACATTCACAGCCTTACCATTATTTGCATTGTCATCATTGCGGTACCATCAAT
CGTTTGCCAGATCATTGTCCTGAATGCAAAAAACAGAGTTTGAAAACGATTGGGGCAGGAACGGCGAAGCTTGAGGAACA
TTTACAAGAACTCTTCCCGCACAATGAAGTGATACGGGTTGATCGTGACAGTACCAGCCGAGTCGGTAGCTGGCAGAAAA
TTTATGATCGGATTCAACAAAACAAGCCAAGTATTTTACTGGGTACGCAAATGCTGGCTAAAGGTCATCACTTCCCGCAT
GTGACACTTGTTGCGATTCTGGATATTGATGCAGGTCTGCTCAGTGTTGATCCGCGCGCGCCTGAACGAACAGCACAATT
GATTGTACAAGTGGCTGGACGTGCTGGACGTGGCGAGCATAAAGGCAGTGTGTATTTACAAAGCTTACGTCCTGACCATC
CGATGTTGACCACACTGATTGAGCATGATTATCGTACCGTCGCCAAACAAATGCTGGCTGATCGCAAAATCGCCCTGCTA
CCGCCTTATCGTTATGCTGTACTGGTTCGGGTTGAATCTAAAGATCGTGACTATAGTCAACAATTTCTAGCGGATATTGC
CCAGCAACTTAGAACAATGGCTGGCGATCTGGTTGATATTTGGGGCCCAATCCCTGCCCCTATGGAGCGTAAAGCAGGCC
GTTATCGTGCGCACATGGTGATTTTGTCTACTGATCGGGCAAAACTGCACTTTTATTTGCGTCAATGGTGGCAACAAGTG
GTACATTTACCTCGACAGCATCAACTCAGGCTTTCCATTGATGTTGATCCACAAGAGTTTAGTTAA

Domains

Predicted by InterproScan.

3DNA-binding domain (3BD) (PriA_3primeBD)

(14-113)

Primosomal protein N C-terminal domain (PriA_C)

(642-737)

DEAD/DEAH box helicase (DEAD)

(210-371)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

83.085

99.73

0.829