Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   LF296_RS16035 Genome accession   NZ_CP085083
Coordinates   3417093..3417980 (-) Length   295 a.a.
NCBI ID   WP_272654932.1    Uniprot ID   A0AAJ6P4W7
Organism   Acinetobacter vivianii strain KJ-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3412093..3422980
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LF296_RS16015 (LF296_16015) - 3412621..3413697 (+) 1077 WP_032863741.1 PhoH family protein -
  LF296_RS16020 (LF296_16020) ybeY 3413763..3414248 (+) 486 WP_069579924.1 rRNA maturation RNase YbeY -
  LF296_RS16025 (LF296_16025) - 3414260..3414559 (+) 300 WP_272654930.1 antibiotic biosynthesis monooxygenase family protein -
  LF296_RS16030 (LF296_16030) - 3414630..3416804 (-) 2175 WP_272654931.1 TonB-dependent siderophore receptor -
  LF296_RS16035 (LF296_16035) tonB2 3417093..3417980 (-) 888 WP_272654932.1 energy transducer TonB Machinery gene
  LF296_RS16040 (LF296_16040) - 3418225..3418905 (+) 681 WP_005255299.1 hypothetical protein -
  LF296_RS16045 (LF296_16045) - 3419102..3419806 (+) 705 WP_272654933.1 DUF3108 domain-containing protein -
  LF296_RS16050 (LF296_16050) - 3419895..3420470 (+) 576 WP_004774302.1 xanthine phosphoribosyltransferase -
  LF296_RS16055 (LF296_16055) - 3420520..3421344 (-) 825 WP_272654934.1 YwqG family protein -
  LF296_RS16060 (LF296_16060) thyA 3421516..3422358 (+) 843 WP_272654935.1 thymidylate synthase -
  LF296_RS16065 (LF296_16065) - 3422379..3422888 (+) 510 WP_272654936.1 dihydrofolate reductase -

Sequence

Protein


Download         Length: 295 a.a.        Molecular weight: 33336.87 Da        Isoelectric Point: 8.3835

>NTDB_id=615126 LF296_RS16035 WP_272654932.1 3417093..3417980(-) (tonB2) [Acinetobacter vivianii strain KJ-1]
MWNKINFRSALSPYWWQDPVFVGSVALAMLLHGAVLAIHFTMPSPSDTSTKEIAVTVRPSTDKVKDADFLAQADQHGSGD
FRQAHRMASDMPAPMQADATTGESELESLEKVQQKRELKFEEKVLMTVLSWQKQAEQSERKKTLDDLQSQFQAKAAMVAS
LEAQYLQRQQNFSRKQRIKTVDGIQAKQDASAAYLDKFRQKVELYGNRYYPDEAKQQRLAGEVRLMVILNAEGGIRAIRL
IESSGHSVLDEAAKASVRRGAPFGAFDAAMKKDISELRIIRTWRFDPVDAEFEVH

Nucleotide


Download         Length: 888 bp        

>NTDB_id=615126 LF296_RS16035 WP_272654932.1 3417093..3417980(-) (tonB2) [Acinetobacter vivianii strain KJ-1]
ATGTGGAATAAAATAAATTTTCGTTCAGCGTTGTCTCCTTATTGGTGGCAAGATCCAGTTTTTGTAGGCTCAGTTGCTTT
GGCAATGCTGCTGCATGGAGCTGTGTTGGCTATTCATTTTACTATGCCATCTCCTTCAGACACCTCAACCAAAGAAATTG
CAGTCACTGTGCGTCCAAGTACGGATAAAGTTAAAGATGCTGATTTTCTCGCACAGGCAGATCAACACGGTTCGGGGGAT
TTCCGTCAAGCGCATCGTATGGCGAGCGATATGCCAGCGCCCATGCAAGCAGATGCGACAACAGGGGAGTCTGAGCTAGA
AAGTCTGGAAAAAGTTCAGCAAAAACGTGAACTCAAGTTTGAAGAAAAAGTGTTGATGACCGTTTTAAGCTGGCAAAAAC
AGGCGGAACAAAGCGAACGGAAAAAGACTCTGGATGATTTGCAAAGCCAGTTTCAGGCCAAAGCCGCAATGGTGGCCAGT
TTAGAGGCGCAATATTTACAACGTCAGCAAAATTTTAGCCGTAAACAACGCATTAAAACAGTAGATGGTATTCAGGCCAA
ACAAGATGCATCCGCTGCCTATCTGGATAAATTTCGTCAGAAAGTCGAATTGTATGGCAACCGTTATTATCCAGATGAAG
CAAAGCAGCAGCGTTTAGCGGGGGAAGTCCGTTTAATGGTGATTCTGAATGCAGAGGGTGGGATTCGGGCGATTCGTTTA
ATCGAAAGTTCGGGGCATTCCGTTTTGGATGAAGCTGCTAAAGCGTCAGTACGCCGTGGTGCACCATTTGGAGCATTTGA
TGCAGCAATGAAAAAGGATATTTCTGAGTTGCGAATTATACGGACTTGGCGTTTTGACCCCGTCGATGCAGAGTTTGAAG
TGCATTGA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

80.142

95.593

0.766