Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   LF296_RS01575 Genome accession   NZ_CP085083
Coordinates   338763..339494 (+) Length   243 a.a.
NCBI ID   WP_005259943.1    Uniprot ID   N9NE94
Organism   Acinetobacter vivianii strain KJ-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 333763..344494
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LF296_RS01550 (LF296_01550) - 335477..335971 (+) 495 WP_272655315.1 type IV pilin protein -
  LF296_RS01555 (LF296_01555) - 335965..336429 (+) 465 WP_272655316.1 type IV pilin protein -
  LF296_RS01560 (LF296_01560) - 336751..337254 (+) 504 WP_123775324.1 GspH/FimT family protein -
  LF296_RS01565 (LF296_01565) pilV 337251..337736 (+) 486 WP_272655317.1 type IV pilus modification protein PilV Machinery gene
  LF296_RS01570 (LF296_01570) - 337738..338766 (+) 1029 WP_272655318.1 PilW family protein -
  LF296_RS01575 (LF296_01575) pilX 338763..339494 (+) 732 WP_005259943.1 pilus assembly PilX family protein Machinery gene
  LF296_RS01580 (LF296_01580) - 339507..344033 (+) 4527 WP_272655319.1 pilus assembly protein PilY -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 26212.87 Da        Isoelectric Point: 8.4627

>NTDB_id=615106 LF296_RS01575 WP_005259943.1 338763..339494(+) (pilX) [Acinetobacter vivianii strain KJ-1]
MIQAQRGATLIVVLMILLMITIIGTLAIRQSVSSLKLVSNHQIQTLLAQNADAALMYFQDPNTQQNLASANGIVGFFKNE
NNKDAELVFCFSGTDPFALSKAGYRLNSQSFNINSSGAGACTEASAKTSSGRKQVVTQVYIKRALTPTSPFADLSRGTEV
TGAKTENNIRLRVYVVSVMQGLLTADALFKADNDPDKGCLTKSIDNNGVNAVAACLKQNTEKPIYNIQVAEYRFLSDFEP
TGS

Nucleotide


Download         Length: 732 bp        

>NTDB_id=615106 LF296_RS01575 WP_005259943.1 338763..339494(+) (pilX) [Acinetobacter vivianii strain KJ-1]
ATGATTCAGGCTCAACGTGGTGCGACACTCATCGTTGTACTCATGATTTTATTAATGATTACGATTATTGGGACGCTGGC
GATACGTCAAAGTGTGAGTTCATTAAAGCTGGTAAGTAATCATCAAATCCAGACTTTACTGGCACAAAATGCAGATGCAG
CATTGATGTATTTTCAAGATCCGAACACTCAACAAAATTTAGCCTCTGCAAATGGCATTGTGGGATTCTTTAAAAACGAA
AATAACAAAGATGCAGAACTCGTATTTTGTTTTTCAGGAACGGATCCATTTGCATTAAGTAAAGCGGGTTATCGGCTAAA
TAGTCAGTCTTTTAATATTAATAGTTCTGGTGCAGGTGCATGTACAGAGGCTTCAGCAAAAACTTCAAGTGGCCGTAAAC
AGGTTGTGACTCAGGTTTATATCAAAAGAGCCTTAACACCAACGTCACCTTTTGCAGACCTATCTCGTGGTACAGAGGTA
ACAGGGGCAAAAACTGAAAACAATATTCGCTTGCGTGTCTATGTTGTATCGGTAATGCAGGGATTATTAACGGCCGATGC
TTTATTTAAAGCCGACAATGATCCTGACAAAGGTTGCCTGACGAAAAGCATAGACAATAATGGCGTCAATGCTGTTGCCG
CCTGCCTAAAACAAAATACAGAAAAGCCAATATATAACATACAAGTCGCAGAATATCGTTTCTTGTCTGACTTTGAACCT
ACAGGTTCATAA

Domains

Predicted by InterproScan.

PilX N-terminal (PilX_N)

(6-55)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9NE94

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baylyi ADP1

52.245

100

0.527