Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   LF296_RS01565 Genome accession   NZ_CP085083
Coordinates   337251..337736 (+) Length   161 a.a.
NCBI ID   WP_272655317.1    Uniprot ID   A0AAJ6P5J1
Organism   Acinetobacter vivianii strain KJ-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 332251..342736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LF296_RS01550 (LF296_01550) - 335477..335971 (+) 495 WP_272655315.1 type IV pilin protein -
  LF296_RS01555 (LF296_01555) - 335965..336429 (+) 465 WP_272655316.1 type IV pilin protein -
  LF296_RS01560 (LF296_01560) - 336751..337254 (+) 504 WP_123775324.1 GspH/FimT family protein -
  LF296_RS01565 (LF296_01565) pilV 337251..337736 (+) 486 WP_272655317.1 type IV pilus modification protein PilV Machinery gene
  LF296_RS01570 (LF296_01570) - 337738..338766 (+) 1029 WP_272655318.1 PilW family protein -
  LF296_RS01575 (LF296_01575) pilX 338763..339494 (+) 732 WP_005259943.1 pilus assembly PilX family protein Machinery gene

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 17026.72 Da        Isoelectric Point: 6.9015

>NTDB_id=615105 LF296_RS01565 WP_272655317.1 337251..337736(+) (pilV) [Acinetobacter vivianii strain KJ-1]
MNIKQQGVGLVEVLVALVLLAIGVLGFAALQLRAVDSSLEANKQVIALTIARDLAEKMRANPQATRAGKYKVAAVEVPKM
AVANVADKPEKIALQDLQNAALQAKDSGMNLAVDQCPTGNNRQCIYVAWDETNLAGNTGIASCIKDGAYVSGSHCLFLEA
Y

Nucleotide


Download         Length: 486 bp        

>NTDB_id=615105 LF296_RS01565 WP_272655317.1 337251..337736(+) (pilV) [Acinetobacter vivianii strain KJ-1]
ATGAATATAAAACAACAAGGGGTTGGACTGGTTGAAGTCTTGGTCGCGCTGGTTTTATTGGCAATCGGTGTCTTAGGCTT
TGCTGCTTTGCAGTTACGGGCGGTGGATTCCAGTCTGGAAGCTAATAAGCAGGTGATAGCACTCACCATTGCACGCGATC
TGGCAGAGAAAATGCGTGCAAATCCACAGGCGACCCGAGCAGGGAAATATAAAGTTGCAGCAGTAGAGGTACCGAAAATG
GCGGTAGCAAATGTAGCGGATAAACCTGAAAAGATCGCGCTACAGGATTTACAGAATGCTGCGCTACAAGCCAAAGATAG
TGGGATGAATCTCGCTGTGGATCAATGCCCAACTGGAAATAACCGACAATGTATTTATGTCGCCTGGGACGAGACCAATC
TGGCAGGAAATACTGGAATTGCTTCATGTATAAAAGATGGGGCTTACGTTTCAGGATCACATTGTCTGTTTCTGGAGGCT
TATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baylyi ADP1

48.276

100

0.522
  pilV Acinetobacter baumannii D1279779

38.983

100

0.429