Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   LIO20_RS23605 Genome accession   NZ_CP085082
Coordinates   5098528..5099085 (+) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PAO1-Holloway     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5093528..5104085
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIO20_RS23585 (LIO20_23545) pilR 5094804..5096141 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  LIO20_RS23590 (LIO20_23550) thiO 5096187..5097281 (-) 1095 WP_010895678.1 glycine oxidase ThiO -
  LIO20_RS23595 (LIO20_23555) - 5097416..5097925 (+) 510 WP_003112829.1 Tfp pilus assembly protein FimT/FimU -
  LIO20_RS23600 (LIO20_23560) - 5098031..5098537 (+) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  LIO20_RS23605 (LIO20_23565) pilV 5098528..5099085 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  LIO20_RS23610 (LIO20_23570) pilW 5099082..5099906 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  LIO20_RS23615 (LIO20_23575) pilX 5099903..5100490 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  LIO20_RS23620 (LIO20_23580) pilY1 5100502..5103987 (+) 3486 WP_003115287.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=615089 LIO20_RS23605 WP_003119423.1 5098528..5099085(+) (pilV) [Pseudomonas aeruginosa strain PAO1-Holloway]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=615089 LIO20_RS23605 WP_003119423.1 5098528..5099085(+) (pilV) [Pseudomonas aeruginosa strain PAO1-Holloway]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995