Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LH408_RS07885 Genome accession   NZ_CP085080
Coordinates   1696849..1697475 (+) Length   208 a.a.
NCBI ID   WP_013097255.1    Uniprot ID   A0A427KI93
Organism   Enterobacter cloacae strain ECl_1.VN     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1691849..1702475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LH408_RS07865 (LH408_07865) - 1692249..1694009 (-) 1761 WP_226836085.1 Lon protease family protein -
  LH408_RS07870 (LH408_07870) matP 1694196..1694648 (+) 453 WP_013097258.1 macrodomain Ter protein MatP -
  LH408_RS07875 (LH408_07875) ompA 1694712..1695767 (-) 1056 WP_014883252.1 porin OmpA -
  LH408_RS07880 (LH408_07880) sulA 1696122..1696631 (-) 510 WP_013097256.1 SOS-induced cell division inhibitor SulA -
  LH408_RS07885 (LH408_07885) sxy/tfoX 1696849..1697475 (+) 627 WP_013097255.1 TfoX/Sxy family DNA transformation protein Regulator
  LH408_RS07890 (LH408_07890) yccS 1697432..1699594 (-) 2163 WP_014831317.1 YccS family putative transporter -
  LH408_RS07895 (LH408_07895) - 1699614..1700060 (-) 447 WP_013097253.1 YccF domain-containing protein -
  LH408_RS07900 (LH408_07900) helD 1700183..1702237 (+) 2055 WP_226836087.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24000.57 Da        Isoelectric Point: 9.2254

>NTDB_id=615042 LH408_RS07885 WP_013097255.1 1696849..1697475(+) (sxy/tfoX) [Enterobacter cloacae strain ECl_1.VN]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDEAVFAMVSDGELYLRACEESAKYCVKNGSSFLTLMKRGRPILLN
YYRVDDGLWQDRERLLQLSSYALNAARKERIQRYQRNRLKDLPNLTFQLEVLLCEAGITNEDTLRSLGARTSWLKLRAKN
KALSIKVLFALEGAIEGLHEAALPAEIRRELTEWFNALPEPQENRSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=615042 LH408_RS07885 WP_013097255.1 1696849..1697475(+) (sxy/tfoX) [Enterobacter cloacae strain ECl_1.VN]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTCTCTCCATTAGGAGAAATTCATCATCGTGCGCT
TTTTGGTGGCTATACCCTGGCCGTCGATGAGGCGGTGTTTGCCATGGTGTCAGACGGTGAGCTTTACCTTCGCGCCTGTG
AGGAAAGTGCGAAGTACTGTGTAAAAAACGGATCCTCCTTTTTGACCTTAATGAAACGCGGCCGGCCGATCCTTCTCAAC
TATTATCGTGTGGATGACGGTCTCTGGCAGGACAGGGAGCGGCTGCTTCAGCTTTCCTCTTACGCGCTTAATGCCGCGCG
TAAAGAGCGCATACAACGCTACCAGCGAAACCGGCTTAAGGATCTGCCCAACCTGACTTTTCAGCTGGAAGTGCTGCTCT
GTGAAGCCGGGATTACCAACGAAGATACCCTCCGGTCGCTGGGAGCCAGAACGAGCTGGCTAAAGCTGCGGGCAAAAAAT
AAAGCGCTCAGTATTAAAGTACTGTTTGCCCTGGAAGGGGCGATTGAGGGCCTGCATGAAGCGGCACTCCCGGCGGAAAT
TCGCCGGGAGCTGACGGAGTGGTTTAATGCGCTGCCTGAGCCACAGGAGAATCGCTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A427KI93

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.128

97.596

0.567