Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LH372_RS15115 Genome accession   NZ_CP085074
Coordinates   3093041..3093670 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain P21_SE1_04.20     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3088041..3098670
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LH372_RS15100 (LH372_15100) helD 3088283..3090337 (-) 2055 WP_001295354.1 DNA helicase IV -
  LH372_RS15105 (LH372_15105) yccF 3090460..3090906 (+) 447 WP_001261235.1 YccF domain-containing protein -
  LH372_RS15110 (LH372_15110) yccS 3090916..3093078 (+) 2163 WP_000875058.1 YccS family putative transporter -
  LH372_RS15115 (LH372_15115) sxy/tfoX 3093041..3093670 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  LH372_RS15120 (LH372_15120) sulA 3093889..3094398 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  LH372_RS15125 (LH372_15125) ompA 3094755..3095795 (+) 1041 WP_000750416.1 porin OmpA -
  LH372_RS15130 (LH372_15130) matP 3095871..3096323 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  LH372_RS15135 (LH372_15135) ycbZ 3096509..3098269 (+) 1761 WP_000152888.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=615027 LH372_RS15115 WP_000839153.1 3093041..3093670(-) (sxy/tfoX) [Escherichia coli strain P21_SE1_04.20]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=615027 LH372_RS15115 WP_000839153.1 3093041..3093670(-) (sxy/tfoX) [Escherichia coli strain P21_SE1_04.20]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1