Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LH371_RS15025 Genome accession   NZ_CP085069
Coordinates   3069477..3070106 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain P27_L1_05.20     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3064477..3075106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LH371_RS15010 (LH371_15010) helD 3064719..3066773 (-) 2055 WP_000420536.1 DNA helicase IV -
  LH371_RS15015 (LH371_15015) yccF 3066896..3067342 (+) 447 WP_001261235.1 YccF domain-containing protein -
  LH371_RS15020 (LH371_15020) yccS 3067352..3069514 (+) 2163 WP_000875015.1 YccS family putative transporter -
  LH371_RS15025 (LH371_15025) sxy/tfoX 3069477..3070106 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  LH371_RS15030 (LH371_15030) sulA 3070325..3070834 (+) 510 WP_106474577.1 SOS-induced cell division inhibitor SulA -
  LH371_RS15035 (LH371_15035) ompA 3071191..3072243 (+) 1053 WP_000750419.1 porin OmpA -
  LH371_RS15040 (LH371_15040) matP 3072318..3072770 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  LH371_RS15045 (LH371_15045) ycbZ 3072956..3074716 (+) 1761 WP_106474576.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=615004 LH371_RS15025 WP_000839153.1 3069477..3070106(-) (sxy/tfoX) [Escherichia coli strain P27_L1_05.20]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=615004 LH371_RS15025 WP_000839153.1 3069477..3070106(-) (sxy/tfoX) [Escherichia coli strain P27_L1_05.20]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GAGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1