Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LH370_RS06810 Genome accession   NZ_CP085063
Coordinates   1326331..1326960 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain P31_YH1_02.21     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1321331..1331960
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LH370_RS06795 (LH370_06795) helD 1321573..1323627 (-) 2055 WP_020232990.1 DNA helicase IV -
  LH370_RS06800 (LH370_06800) yccF 1323750..1324196 (+) 447 WP_001261235.1 YccF domain-containing protein -
  LH370_RS06805 (LH370_06805) yccS 1324206..1326368 (+) 2163 WP_000875041.1 YccS family putative transporter -
  LH370_RS06810 (LH370_06810) sxy/tfoX 1326331..1326960 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  LH370_RS06815 (LH370_06815) sulA 1327179..1327688 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  LH370_RS06820 (LH370_06820) ompA 1328045..1329097 (+) 1053 WP_000750418.1 porin OmpA -
  LH370_RS06825 (LH370_06825) matP 1329172..1329624 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  LH370_RS06830 (LH370_06830) ycbZ 1329810..1331570 (+) 1761 WP_000156476.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=614972 LH370_RS06810 WP_000839153.1 1326331..1326960(-) (sxy/tfoX) [Escherichia coli strain P31_YH1_02.21]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=614972 LH370_RS06810 WP_000839153.1 1326331..1326960(-) (sxy/tfoX) [Escherichia coli strain P31_YH1_02.21]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1