Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   NQZ97_RS09585 Genome accession   NZ_CP102136
Coordinates   1961246..1961863 (+) Length   205 a.a.
NCBI ID   WP_024377451.1    Uniprot ID   -
Organism   Streptococcus suis strain M105052_S26     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1956246..1966863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ97_RS09560 (NQZ97_09560) - 1957056..1958510 (-) 1455 WP_105130224.1 cell division site-positioning protein MapZ family protein -
  NQZ97_RS09565 (NQZ97_09565) - 1958520..1959677 (-) 1158 WP_105130225.1 class I SAM-dependent RNA methyltransferase -
  NQZ97_RS09575 (NQZ97_09575) gpsB 1960235..1960570 (-) 336 WP_170238383.1 cell division regulator GpsB -
  NQZ97_RS09580 (NQZ97_09580) - 1960641..1961180 (-) 540 WP_004194171.1 DUF1273 domain-containing protein -
  NQZ97_RS09585 (NQZ97_09585) recU 1961246..1961863 (+) 618 WP_024377451.1 Holliday junction resolvase RecU Machinery gene
  NQZ97_RS09590 (NQZ97_09590) pbp1a 1961844..1964018 (+) 2175 WP_161945754.1 penicillin-binding protein PBP1A -
  NQZ97_RS09595 (NQZ97_09595) rsmG 1964077..1964790 (+) 714 WP_024377206.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  NQZ97_RS09600 (NQZ97_09600) - 1965151..1965354 (-) 204 WP_014637517.1 cold-shock protein -
  NQZ97_RS09605 (NQZ97_09605) - 1965724..1966557 (-) 834 WP_024386587.1 energy-coupling factor transporter transmembrane protein EcfT -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23747.37 Da        Isoelectric Point: 10.0312

>NTDB_id=614923 NQZ97_RS09585 WP_024377451.1 1961246..1961863(+) (recU) [Streptococcus suis strain M105052_S26]
MVNYPHKVSKKINRTSPISSQRVNFANRGMSFEAAINDSNQYYLAHGIAVIHKKPTPVQIVKVDYPKRSRAKIVEAYFRQ
ASTTDYSGVFKRHYIDFEAKETRQKASMPMKNFHAHQIEHMKQVVKQGGICFVLLHFSTLKETYLLPATHLIEFYQVDMG
SKSMPLTFIRQYGFEIQMGRFPSIPYLEIVEKNLLGGESFENYNN

Nucleotide


Download         Length: 618 bp        

>NTDB_id=614923 NQZ97_RS09585 WP_024377451.1 1961246..1961863(+) (recU) [Streptococcus suis strain M105052_S26]
ATGGTCAATTATCCTCATAAGGTATCAAAAAAAATCAATAGAACCAGTCCTATTTCATCCCAGCGAGTAAACTTTGCTAA
TCGCGGAATGTCTTTTGAGGCCGCTATCAACGATAGCAATCAATATTACCTTGCGCACGGCATTGCTGTCATTCACAAGA
AGCCAACTCCCGTGCAAATTGTAAAAGTTGATTACCCCAAACGGAGCCGTGCTAAGATTGTCGAGGCATACTTTCGACAG
GCATCTACCACAGACTACTCTGGTGTTTTTAAAAGACATTATATTGATTTTGAAGCGAAAGAGACACGCCAAAAAGCATC
CATGCCCATGAAAAATTTTCATGCGCATCAGATCGAACACATGAAACAGGTTGTAAAACAAGGTGGCATTTGTTTTGTCC
TTCTTCACTTTTCAACATTAAAAGAAACCTATCTCTTGCCAGCCACTCATTTGATCGAATTTTATCAAGTAGACATGGGT
AGTAAGTCGATGCCTCTAACCTTTATTCGACAATACGGCTTTGAGATTCAAATGGGGCGTTTCCCCAGCATCCCATATCT
GGAAATCGTTGAAAAAAATCTATTAGGTGGTGAATCTTTTGAAAACTACAACAATTAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(28-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

48.744

97.073

0.473